Exon Structure of HORVU6Hr1G011910.3

ChromosomeExonStartStopDirection
chr6H12222940922229197+
chr6H22222965022229501+
chr6H32222984222229786+
chr6H42223128722231195+
chr6H52223149722231402+
chr6H62223250722232423+
chr6H72223310022233048+
chr6H82223328822233205+
chr6H92223373322233388+
chr6H102223432722233825+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g03050.1 +1 6e-110 328 159/190 (84%) protein|dimethyladenosine transferase, putative, expressed
TAIR PP10 AT1G01860 @ ARAPORT
AT1G01860.1 @ TAIR
+1 1e-90 282 166/268 (62%) Symbols: PFC1 | Ribosomal RNA adenine dimethylase family protein | chr1:304439-306275 REVERSE LENGTH=343
BRACH PP3 Bradi3g02232.3.p +1 5e-142 414 244/266 (92%) pacid=32819654 transcript=Bradi3g02232.3 locus=Bradi3g02232 ID=Bradi3g02232.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (1680 bp)

>HORVU6Hr1G011910.3 1680 150831_barley_pseudomolecules
CTGGCGCTCACTTCCTTATCCCCGCGGCCTTCCCCGTCTCCGGCCACGCCTCCTCACCGC
CGGCCGCCGCCGCCCCGCGGCCGTATCCGGCCCACATCCGCCGTCGCAACGGCCGCATCC
GACGGCGGCGGCGCGGGCGACGACTACCACTCGACCATCCGCTCACTCAACTCGCACGGC
CGCCGCCACGTCCCCCGCAAATCCCTCGGTCAGAACTACATGCTGAACGCGAGGGTGAAC
GAGGAGCTGGTGGCGGCGGCGGGGGTAGAGGTAGGGGACGTCGTGCTCGAGATAGGACCC
GGGACGGGCTCGCTCACCGCCGCTCTGCTCGCCGCCGGCGCCACCGTCGTCGCCGTCGAG
AAGGATAAGCATATGGCTACACTTGTGAGAGATAGGTTTGGATCCACAGAGCAATTGAAG
GTCATTGAAGAAGATATTACAAAATTTCACGTTCACTCCCATTTTCTCCCTATCCTGGAC
GAGAAATCCCGTGGCACGAAAAAATATGCCAAGGTTGTAGCAAACTTACCATTCAATGTC
AGCACTGAAGTTGTCAAACAAATTCTCCCAATGGGAGATGTTTTCTCTGTCATGGTGCTC
ATGCTTCAGGATGAAGCAGCGCTACGCCTTGCAAATGCTTCAATACAAACACCAGAGTAC
CGACCTATCAATGTGTTTGTGAATTTCTACTCTGAACCCGAATACAAGTTCAAGGTAGAG
AGGGCCAACTTTTTCCCTCAACCGACGGTTGACGGTGGTGTTATAAGGTTTAAAATAAAG
GATGCTGGGGAGTATCCGCCTGTTAGTTCTAACAAAAGTTTTTTTTCAATGGTGAACTCC
GCGTTCAATGGGAAGCGCAAGATGCTTCGGAAATCACTTCAACACCTATATTCTTCTGTT
GAAATCGAGGCCGCTCTTACCAATATCGGTCTTCCGCCTACAGTAAGCTCTCCCTCCATC
CATCCATCCTTGCTCGTGCACTAAATTCATTATTGCTGCAGGCTAGACCGTCGGAACTGA
TGATGGATGATTTCGTGAGGTTGCACAATCACCTGGGAAAAGTATGACCACCCCTGCATT
CAAAATGCGTATGGAATCATCTTATTGGTTTGCTCGCTGGACTATGCATGCCTCTGAAGT
GATTTTGTTCCCAGCTAGAGGGCACTGCAACTTGCAGATCATCCTTGCTGACAGTGACCG
CCTAGTATTCTTCAGCAGTCCCACAGCCTTCACCGCAACATAATTGGTGGCACAGCTTCA
GCCCACGGTGTCCTTGCATGGATGATCATAGTGATTGTGCTATAAGTTCAAAACCAATGA
TAATGCGCAGGGCATGATTTGCTCGCACAAGAATTGCAGTTCTTTTCCTTATCGCAGATA
GCATCCCTGCAAGAGGGAAGATACGCGGGCGTTGCATGTGTATAATTTACTGCAACTATC
TATCCTCTTGTACTAATCTTCGCAGGTTGGAGGCAGAAATGTAGGGATCAAATGTCTGTC
AGAACAATCTGAAGACCAGGCAAAGATGCTAGCTGCTCATAGTAAATTGCCAATAGCGTT
TTTATGTGTGGACATAGATGGTAGATAGAGGTACAGCCATTGCATTTTGAGCTTAAGTTT
TGGCTATAAACTGCAACAAAAAGGTGCAAATGCTCAGTGTTTGAGTGAGCGATATTCTGC