- Transcript HORVU6Hr1G011910.29
- Transcript IDHORVU6Hr1G011910.29
- Gene IDHORVU6Hr1G011910
Barley RTD
Exon Structure of HORVU6Hr1G011910.29
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 22236688 | 22236573 | + |
| chr6H | 2 | 22238974 | 22237685 | + |
| chr6H | 3 | 22239292 | 22239057 | + |
| chr6H | 4 | 22239749 | 22239402 | + |
| chr6H | 5 | 22240152 | 22239832 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03040.3 | +3 | 5e-101 | 312 | 192/231 (83%) | protein|RNA recognition motif containing protein, expressed |
| TAIR PP10 | AT5G52040 @ ARAPORT AT5G52040.4 @ TAIR |
+3 | 3e-65 | 220 | 144/256 (56%) | Symbols: RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131881-21133318 FORWARD LENGTH=324 |
| BRACH PP3 | Bradi3g02226.1.p | +3 | 5e-111 | 339 | 213/248 (86%) | pacid=32814082 transcript=Bradi3g02226.1 locus=Bradi3g02226 ID=Bradi3g02226.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2311 bp)
>HORVU6Hr1G011910.29 2311 150831_barley_pseudomolecules ACGGACCTGCCCCTGTCTGTCTCCGTCCTCCCCCCGCTCCACTCGCCGCCGGGTCCGAAC CAGCCGCGCCCCCCGTCGAAAACCTAGGGTTCCGCCCTCCCCCGCCCCCTCCGAAGGTTT GGGGAAGATCTGTTTATACAGCAACACCAACATGAGGCCAATTTTCTGCGGGAACCTTGA CTATGATGCCCGCCAATCTGAAGTCGAGCGTCTTTTTGGCAAATATGGAAGAGTGGAGCG AGTTGACATGAAGACAGGTATGAACTCTTTGTGTCCATTCTCTAGATTTAAGTTGTCCTT TTTACCATCTGATTTTATGTTGCACCTATTTGGTGGTGTCGGTCATTAAGGCAACAAACT CTTCTAAGAAATAAACTTACAAGTGTAATGCTTGAGTAAACTGCTATTTACTCAAAAGGG ATATTAATGTGCACAAATACATTAGCTCCATACAAGTCTTCCAAGGGAATGGAGTGAATG GTGTGCTCAGTTAGCTTTAACAAGATTGGGTGGGTGCCAAGTGGAAACAGCCGTCCTCGT TGCTGCAAAGACTGCCATCGCTTCTTCAACCATCCCTGGTGCAGTATGATGCGGTCTGTT ATAAGATATGATTGGACAAAGTGTATCAGGCCAGAGACTGTTCAGCAGAATCAGATTATG TTTATTGTTATTTTGTCAAAGTCATTGGACAAGTCCAAACCAGGATATAAATTTAGAAAA AGAAGTTATTTCTTAAAGTTTAGGTCCAGTACTCAATTGTTTCTTTGCCGCAGGAATATC ATGAAGCATCTGTGCTCTTCCTGGTTGATGGACTGGGCTCTACCTTTCCTGCCTGAGCCC CTGCCTCATGCCCTGTCCATTTCCAGGAGTTCACAGTCCACCATGACATCTGTCACTTGG AAACGACCACCTTGTGACTGATGTCTTACTTTTACATCAATGTTGCACCCTCCTCCCCCG CCCGGTTACACTCTCCCACGTCGACCAAACCATGCCAATCTCATGGCCGGCTGGAGAAGA GTAGAGGTTCCACCGGCAGCACCACCACCTCTTTTGGTGTACCACGAACGTTTGGATTAT CGTACTCTGACATCATTTAGTGCAACATGCAAAAGGTCTGTTCTTATTTGTGCTGACATA TCAATTTGTAGCTTCCTGAGGTGATCTTGAAGTTTTTTTTCTCTTGCAAAGATTTTGATC GCCATACAAGCCATTATCTGTTTACCCTAAGGGTTAGTAAAATGTGCGAGCTACTTTAAA TAACTAGTCATCTTTCCATGTTCAACATTGAAGGATTTGCGTTCGTCTACATGGAAGATG AACGTGATGCTGAAGATGCTATCCGTAGACTTGATAGAACTGACTTTGGTAGAACAGGGA GGAGACTGAGAGTCGAATGGACAAAGGAGGATCGCAGTGGTGGTCGGAAAGGAAATGGAA AGAGATCTCCAAGCAGCGTGAAACCAACCAAAACCTTGTTTGTGATCAACTTTGATCCAA TCAACACAAGGACAAGAGATCTGGAGAAGCACTTTGATCTGTATGGCAAGATTGCAAATA TCAGAATCAGAAGGAACTTTGCATTTGTCCAGTATGAAACACAGGAGGATGCTACTAAAG CTCTGGACGGTACTAATGGAAGCACTGTGATGGACAGGGTGATTTCTGTTGAGTATGCGC TTCGTGACGATGATGAAAAAAGGAACGGGTACAGTCCAGACAGGAGAGGAGGCCGTGATA GGTCTCCTGACAGAAGGGACAATCGTGGTAGGTCGGCAAGTCCTTATGGCAGAGGGCGGG AAAGGGGCAGCCCAGACTATGGCAGGGGCAGGGAGAGGGGCAGCCCGGACTATGGCAAGG GCGGTGCCAGAGATAGTCCTGACTATGTCCGTGGTGGAAGCCCGTACGGCGGCAAAGGGG ATGACAGGGCTAGCCCCAAGTATGACCGTGAACGCCGTGAAGCCAGTCCTGCCTATGACA GGCGCCGCAGCCGCTCGCCTGCAAGGGAAGATAGGGACTGAAGCTGTACCATGGATGGCT GCGCTCAATCCTGGGTGCTTCGGACCAAATGGATGCACCGTCCTAGTGCGATGTTCGCTC AAGTTGGTTATGTTAGGCAGCCAGGAACTTCTGTAATATCTCTCTATTAGCTAGCTCTAG CTGAATGCTTTGTCGATTTAGTTTGAACTGTGATTGTTAGCTTGAACTTTGTGCAAAGGG ATTCTTCCGGTGAGACCATTTGCGGAGCGATGAGATGTACCGTGTATCGACCGACAGCAG TATTCTAGCTTTGCACTTTGGTTATTCTTCC