- Transcript HORVU6Hr1G011910.28
- Transcript IDHORVU6Hr1G011910.28
- Gene IDHORVU6Hr1G011910
Barley RTD
Exon Structure of HORVU6Hr1G011910.28
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 22236688 | 22236572 | + |
| chr6H | 2 | 22238974 | 22237685 | + |
| chr6H | 3 | 22239292 | 22239057 | + |
| chr6H | 4 | 22239538 | 22239402 | + |
| chr6H | 5 | 22239631 | 22239603 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03040.3 | +1 | 4e-73 | 235 | 124/145 (86%) | protein|RNA recognition motif containing protein, expressed |
| TAIR PP10 | AT4G25500 @ ARAPORT AT4G25500.3 @ TAIR |
+1 | 1e-57 | 196 | 101/144 (70%) | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, At-RS40 | arginine/serine-rich splicing factor 35 | chr4:13025850-13027243 FORWARD LENGTH=317 |
| BRACH PP3 | Bradi3g02226.1.p | +1 | 3e-75 | 242 | 136/165 (82%) | pacid=32814082 transcript=Bradi3g02226.1 locus=Bradi3g02226 ID=Bradi3g02226.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1809 bp)
>HORVU6Hr1G011910.28 1809 150831_barley_pseudomolecules CACGGACCTGCCCCTGTCTGTCTCCGTCCTCCCCCCGCTCCACTCGCCGCCGGGTCCGAA CCAGCCGCGCCCCCCGTCGAAAACCTAGGGTTCCGCCCTCCCCCGCCCCCTCCGAAGGTT TGGGGAAGATCTGTTTATACAGCAACACCAACATGAGGCCAATTTTCTGCGGGAACCTTG ACTATGATGCCCGCCAATCTGAAGTCGAGCGTCTTTTTGGCAAATATGGAAGAGTGGAGC GAGTTGACATGAAGACAGGTATGAACTCTTTGTGTCCATTCTCTAGATTTAAGTTGTCCT TTTTACCATCTGATTTTATGTTGCACCTATTTGGTGGTGTCGGTCATTAAGGCAACAAAC TCTTCTAAGAAATAAACTTACAAGTGTAATGCTTGAGTAAACTGCTATTTACTCAAAAGG GATATTAATGTGCACAAATACATTAGCTCCATACAAGTCTTCCAAGGGAATGGAGTGAAT GGTGTGCTCAGTTAGCTTTAACAAGATTGGGTGGGTGCCAAGTGGAAACAGCCGTCCTCG TTGCTGCAAAGACTGCCATCGCTTCTTCAACCATCCCTGGTGCAGTATGATGCGGTCTGT TATAAGATATGATTGGACAAAGTGTATCAGGCCAGAGACTGTTCAGCAGAATCAGATTAT GTTTATTGTTATTTTGTCAAAGTCATTGGACAAGTCCAAACCAGGATATAAATTTAGAAA AAGAAGTTATTTCTTAAAGTTTAGGTCCAGTACTCAATTGTTTCTTTGCCGCAGGAATAT CATGAAGCATCTGTGCTCTTCCTGGTTGATGGACTGGGCTCTACCTTTCCTGCCTGAGCC CCTGCCTCATGCCCTGTCCATTTCCAGGAGTTCACAGTCCACCATGACATCTGTCACTTG GAAACGACCACCTTGTGACTGATGTCTTACTTTTACATCAATGTTGCACCCTCCTCCCCC GCCCGGTTACACTCTCCCACGTCGACCAAACCATGCCAATCTCATGGCCGGCTGGAGAAG AGTAGAGGTTCCACCGGCAGCACCACCACCTCTTTTGGTGTACCACGAACGTTTGGATTA TCGTACTCTGACATCATTTAGTGCAACATGCAAAAGGTCTGTTCTTATTTGTGCTGACAT ATCAATTTGTAGCTTCCTGAGGTGATCTTGAAGTTTTTTTTCTCTTGCAAAGATTTTGAT CGCCATACAAGCCATTATCTGTTTACCCTAAGGGTTAGTAAAATGTGCGAGCTACTTTAA ATAACTAGTCATCTTTCCATGTTCAACATTGAAGGATTTGCGTTCGTCTACATGGAAGAT GAACGTGATGCTGAAGATGCTATCCGTAGACTTGATAGAACTGACTTTGGTAGAACAGGG AGGAGACTGAGAGTCGAATGGACAAAGGAGGATCGCAGTGGTGGTCGGAAAGGAAATGGA AAGAGATCTCCAAGCAGCGTGAAACCAACCAAAACCTTGTTTGTGATCAACTTTGATCCA ATCAACACAAGGACAAGAGATCTGGAGAAGCACTTTGATCTGTATGGCAAGATTGCAAAT ATCAGAATCAGAAGGAACTTTGCATTTGTCCAGTATGAAACACAGGAGGATGCTACTAAA GCTCTGGACGGTACTAATGGAAGCACTGTGATGGACAGGGTGATTTCTGTTGAGTATGCG CTTCGTGACGATGATGAAAAAAGGAACGGGTACAGTCCAGACAGGAGAGGAGGCCGTGAT AGGTCTCCTGACAGAAGGGACAATCGTGGTAGGTCGGCAACCCGGACTATGGCAAGGGCG GTGCCAGAG