Transcript Data
Barley RTD
Links



Exon Structure of HORVU6Hr1G011910.27

ChromosomeExonStartStopDirection
chr6H12223310022233078+
chr6H22223329222233205+
chr6H32223373322233388+
chr6H42223443022233825+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7None-----
TAIR PP10None-----
BRACH PP3None-----




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (1063 bp)

>HORVU6Hr1G011910.27 1063 150831_barley_pseudomolecules
CCAACTTTTTCCCTCAACCGACGGTTGACGGTGGTGTTATAAGGTTTAAAATAAAGGATG
CTGGGGAGTATCCGCCTGTTAGTTCTAACAAAAGTTTTTTTTCAATGGTGAGTGAACTCC
GCGTTCAATGGGAAGCGCAAGATGCTTCGGAAATCACTTCAACACCTATATTCTTCTGTT
GAAATCGAGGCCGCTCTTACCAATATCGGTCTTCCGCCTACAGTAAGCTCTCCCTCCATC
CATCCATCCTTGCTCGTGCACTAAATTCATTATTGCTGCAGGCTAGACCGTCGGAACTGA
TGATGGATGATTTCGTGAGGTTGCACAATCACCTGGGAAAAGTATGACCACCCCTGCATT
CAAAATGCGTATGGAATCATCTTATTGGTTTGCTCGCTGGACTATGCATGCCTCTGAAGT
GATTTTGTTCCCAGCTAGAGGGCACTGCAACTTGCAGATCATCCTTGCTGACAGTGACCG
CCTAGTATTCTTCAGCAGTCCCACAGCCTTCACCGCAACATAATTGGTGGCACAGCTTCA
GCCCACGGTGTCCTTGCATGGATGATCATAGTGATTGTGCTATAAGTTCAAAACCAATGA
TAATGCGCAGGGCATGATTTGCTCGCACAAGAATTGCAGTTCTTTTCCTTATCGCAGATA
GCATCCCTGCAAGAGGGAAGATACGCGGGCGTTGCATGTGTATAATTTACTGCAACTATC
TATCCTCTTGTACTAATCTTCGCAGGTTGGAGGCAGAAATGTAGGGATCAAATGTCTGTC
AGAACAATCTGAAGACCAGGCAAAGATGCTAGCTGCTCATAGTAAATTGCCAATAGCGTT
TTTATGTGTGGACATAGATGGTAGATAGAGGTACAGCCATTGCATTTTGAGCTTAAGTTT
TGGCTATAAACTGCAACAAAAAGGTGCAAATGCTCAGTGTTTGAGTGAGCGATATTCTGC
TGTTTTTTTACCTGGCAGCGTGTCGCTACGATGCAACATATAGTTAGTGGCAGTTCTTTT
CCTGGCAAATACTTCCTCCGTCTAGAATTACTTGTCGCATAAA