- Transcript HORVU6Hr1G011910.26
- Transcript IDHORVU6Hr1G011910.26
- Gene IDHORVU6Hr1G011910
Barley RTD
Exon Structure of HORVU6Hr1G011910.26
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 22233100 | 22232878 | + |
| chr6H | 2 | 22233292 | 22233205 | + |
| chr6H | 3 | 22233733 | 22233392 | + |
| chr6H | 4 | 22234264 | 22233825 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03050.2 | +2 | 2e-41 | 145 | 72/93 (77%) | protein|dimethyladenosine transferase, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g02232.3.p | +2 | 6e-45 | 158 | 82/113 (73%) | pacid=32819654 transcript=Bradi3g02232.3 locus=Bradi3g02232 ID=Bradi3g02232.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1093 bp)
>HORVU6Hr1G011910.26 1093 150831_barley_pseudomolecules CTCTTTTGTACTCTAGTAACTGCTACTGTCTACTGTGTAGCTATGCAATTCATGCCTTGA TAGTCACCAAATCATCTGAACTGTTTTTCAGTGTCTTAACAATTCGCTTAGTATGCCTAG GTACATATATCACAGTTAATGAAATGCATACGTTATCTTTGTTTTTTTAGAACCCGAATA CAAGTTCAAGGTAGAGAGGGCCAACTTTTTCCCTCAACCGACGGTTGACGGTGGTGTTAT AAGGTTTAAAATAAAGGATGCTGGGGAGTATCCGCCTGTTAGTTCTAACAAAAGTTTTTT TTCAATGGTGAACTCCGCGTTCAATGGGAAGCGCAAGATGCTTCGGAAATCACTTCAACA CCTATATTCTTCTGTTGAAATCGAGGCCGCTCTTACCAATATCGGTCTTCCGCCTACAGT AAGCTCTCCCTCCATCCATCCATCCTTGCTCGTGCACTAAATTCATTATTGCTGCAGGCT AGACCGTCGGAACTGATGATGGATGATTTCGTGAGGTTGCACAATCACCTGGGAAAAGTA TGACCACCCCTGCATTCAAAATGCGTATGGAATCATCTTATTGGTTTGCTCGCTGGACTA TGCATGCCTCTGAAGTGATTTTGTTCCCAGCTAGAGGGCACTGCAACTTGCAGATCATCC TTGCTGACAGTGACCGCCTAGTATTCTTCAGCAGTCCCACAGCCTTCACCGCAACATAAT TGGTGGCACAGCTTCAGCCCACGGTGTCCTTGCATGGATGATCATAGTGATTGTGCTATA AGTTCAAAACCAATGATAATGCGCAGGGCATGATTTGCTCGCACAAGAATTGCAGTTCTT TTCCTTATCGCAGATAGCATCCCTGCAAGAGGGAAGATACGCGGGCGTTGCATGTGTATA ATTTACTGCAACTATCTATCCTCTTGTACTAATCTTCGCAGGTTGGAGGCAGAAATGTAG GGATCAAATGTCTGTCAGAACAATCTGAAGACCAGGCAAAGATGCTAGCTGCTCATAGTA AATTGCCAATAGCGTTTTTATGTGTGGACATAGATGGTAGATAGAGGTACAGCCATTGCA TTTTGAGCTTAAG