- Transcript HORVU6Hr1G011910.25
- Transcript IDHORVU6Hr1G011910.25
- Gene IDHORVU6Hr1G011910
Barley RTD
Exon Structure of HORVU6Hr1G011910.25
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 22231497 | 22231375 | + |
| chr6H | 2 | 22232507 | 22232423 | + |
| chr6H | 3 | 22233100 | 22233048 | + |
| chr6H | 4 | 22233288 | 22233205 | + |
| chr6H | 5 | 22233733 | 22233388 | + |
| chr6H | 6 | 22234295 | 22233825 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03050.2 | +1 | 1e-82 | 253 | 122/145 (84%) | protein|dimethyladenosine transferase, putative, expressed |
| TAIR PP10 | AT1G01860 @ ARAPORT AT1G01860.1 @ TAIR |
+1 | 9e-64 | 207 | 98/151 (65%) | Symbols: PFC1 | Ribosomal RNA adenine dimethylase family protein | chr1:304439-306275 REVERSE LENGTH=343 |
| BRACH PP3 | Bradi3g02232.3.p | +1 | 4e-89 | 273 | 133/152 (88%) | pacid=32819654 transcript=Bradi3g02232.3 locus=Bradi3g02232 ID=Bradi3g02232.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1162 bp)
>HORVU6Hr1G011910.25 1162 150831_barley_pseudomolecules GTCCACCTCAAACTTTGTATTTTGCAGGTTGTAGCAAACTTACCATTCAATGTCAGCACT GAAGTTGTCAAACAAATTCTCCCAATGGGAGATGTTTTCTCTGTCATGGTGCTCATGCTT CAGGATGAAGCAGCGCTACGCCTTGCAAATGCTTCAATACAAACACCAGAGTACCGACCT ATCAATGTGTTTGTGAATTTCTACTCTGAACCCGAATACAAGTTCAAGGTAGAGAGGGCC AACTTTTTCCCTCAACCGACGGTTGACGGTGGTGTTATAAGGTTTAAAATAAAGGATGCT GGGGAGTATCCGCCTGTTAGTTCTAACAAAAGTTTTTTTTCAATGGTGAACTCCGCGTTC AATGGGAAGCGCAAGATGCTTCGGAAATCACTTCAACACCTATATTCTTCTGTTGAAATC GAGGCCGCTCTTACCAATATCGGTCTTCCGCCTACAGTAAGCTCTCCCTCCATCCATCCA TCCTTGCTCGTGCACTAAATTCATTATTGCTGCAGGCTAGACCGTCGGAACTGATGATGG ATGATTTCGTGAGGTTGCACAATCACCTGGGAAAAGTATGACCACCCCTGCATTCAAAAT GCGTATGGAATCATCTTATTGGTTTGCTCGCTGGACTATGCATGCCTCTGAAGTGATTTT GTTCCCAGCTAGAGGGCACTGCAACTTGCAGATCATCCTTGCTGACAGTGACCGCCTAGT ATTCTTCAGCAGTCCCACAGCCTTCACCGCAACATAATTGGTGGCACAGCTTCAGCCCAC GGTGTCCTTGCATGGATGATCATAGTGATTGTGCTATAAGTTCAAAACCAATGATAATGC GCAGGGCATGATTTGCTCGCACAAGAATTGCAGTTCTTTTCCTTATCGCAGATAGCATCC CTGCAAGAGGGAAGATACGCGGGCGTTGCATGTGTATAATTTACTGCAACTATCTATCCT CTTGTACTAATCTTCGCAGGTTGGAGGCAGAAATGTAGGGATCAAATGTCTGTCAGAACA ATCTGAAGACCAGGCAAAGATGCTAGCTGCTCATAGTAAATTGCCAATAGCGTTTTTATG TGTGGACATAGATGGTAGATAGAGGTACAGCCATTGCATTTTGAGCTTAAGTTTTGGCTA TAAACTGCAACAAAAAGGTGCA