Transcript Data
Barley RTD
Links



Exon Structure of HORVU6Hr1G011910.24

ChromosomeExonStartStopDirection
chr6H12223128722231121+
chr6H22223149722231402+
chr6H32223250722232423+
chr6H42223310022233048+
chr6H52223328822233205+
chr6H62223355722233388+
chr6H72223373722233711+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g03050.2 +3 7e-107 308 148/179 (83%) protein|dimethyladenosine transferase, putative, expressed
TAIR PP10 AT1G01860 @ ARAPORT
AT1G01860.1 @ TAIR		 +3 6e-74 227 110/177 (62%) Symbols: PFC1 | Ribosomal RNA adenine dimethylase family protein | chr1:304439-306275 REVERSE LENGTH=343
BRACH PP3 Bradi3g02232.3.p +3 2e-113 328 158/176 (90%) pacid=32819654 transcript=Bradi3g02232.3 locus=Bradi3g02232 ID=Bradi3g02232.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (682 bp)

>HORVU6Hr1G011910.24 682 150831_barley_pseudomolecules
NNNNNNNNNNNNNNNNNNNNNTCTAACTGGAGTAGTTCTCATCCGATGTGTAATGAGTTT
GAAATTTAATGCAGGTCATTGAAGAAGATATTACAAAATTTCACGTTCACTCCCATTTTC
TCCCTATCCTGGACGAGAAATCCCGTGGCACGAAAAAATATGCCAAGGTTGTAGCAAACT
TACCATTCAATGTCAGCACTGAAGTTGTCAAACAAATTCTCCCAATGGGAGATGTTTTCT
CTGTCATGGTGCTCATGCTTCAGGATGAAGCAGCGCTACGCCTTGCAAATGCTTCAATAC
AAACACCAGAGTACCGACCTATCAATGTGTTTGTGAATTTCTACTCTGAACCCGAATACA
AGTTCAAGGTAGAGAGGGCCAACTTTTTCCCTCAACCGACGGTTGACGGTGGTGTTATAA
GGTTTAAAATAAAGGATGCTGGGGAGTATCCGCCTGTTAGTTCTAACAAAAGTTTTTTTT
CAATGGTGAACTCCGCGTTCAATGGGAAGCGCAAGATGCTTCGGAAATCACTTCAACACC
TATATTCTTCTGTTGAAATCGAGGCCGCTCTTACCAATATCGGTCTTCCGCCTACAGTAA
GCTCTCCCTCCATCCATCCATCCTTGCTCGTGCACTAAATTCATTATTGCTGCAGCTAGA
GGGCACTGCAACTTGCAGGTAA