- Transcript HORVU6Hr1G011910.22
- Transcript IDHORVU6Hr1G011910.22
- Gene IDHORVU6Hr1G011910
Barley RTD
Exon Structure of HORVU6Hr1G011910.22
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 22229650 | 22229599 | + |
| chr6H | 2 | 22229842 | 22229786 | + |
| chr6H | 3 | 22231290 | 22231195 | + |
| chr6H | 4 | 22231497 | 22231402 | + |
| chr6H | 5 | 22232507 | 22232423 | + |
| chr6H | 6 | 22233100 | 22233048 | + |
| chr6H | 7 | 22233288 | 22233205 | + |
| chr6H | 8 | 22233499 | 22233388 | + |
| chr6H | 9 | 22233922 | 22233558 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03050.1 | +2 | 2e-111 | 323 | 158/189 (84%) | protein|dimethyladenosine transferase, putative, expressed |
| TAIR PP10 | AT1G01860 @ ARAPORT AT1G01860.1 @ TAIR |
+2 | 2e-78 | 243 | 119/196 (61%) | Symbols: PFC1 | Ribosomal RNA adenine dimethylase family protein | chr1:304439-306275 REVERSE LENGTH=343 |
| BRACH PP3 | Bradi3g02232.3.p | +2 | 5e-124 | 360 | 175/194 (90%) | pacid=32819654 transcript=Bradi3g02232.3 locus=Bradi3g02232 ID=Bradi3g02232.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1000 bp)
>HORVU6Hr1G011910.22 1000 150831_barley_pseudomolecules GCTCACCGCCGCTCTGCTCGCCGCCGGCGCCACCGTCGTCGCCGTCGAGAAGGATAAGCA TATGGCTACACTTGTGAGAGATAGGTTTGGATCCACAGAGCAATTGAAGGTCATTGAAGA AGATATTACAAAATTTCACGTTCACTCCCATTTTCTCCCTATCCTGGACGAGAAATCCCG TGGCACGAAAAAATATGCCAAGGTTGTTGTAGCAAACTTACCATTCAATGTCAGCACTGA AGTTGTCAAACAAATTCTCCCAATGGGAGATGTTTTCTCTGTCATGGTGCTCATGCTTCA GGATGAAGCAGCGCTACGCCTTGCAAATGCTTCAATACAAACACCAGAGTACCGACCTAT CAATGTGTTTGTGAATTTCTACTCTGAACCCGAATACAAGTTCAAGGTAGAGAGGGCCAA CTTTTTCCCTCAACCGACGGTTGACGGTGGTGTTATAAGGTTTAAAATAAAGGATGCTGG GGAGTATCCGCCTGTTAGTTCTAACAAAAGTTTTTTTTCAATGGTGAACTCCGCGTTCAA TGGGAAGCGCAAGATGCTTCGGAAATCACTTCAACACCTATATTCTTCTGTTGAAATCGA GGCCGCTCTTACCAATATCGGTCTTCCGCCTACAGGCTAGACCGTCGGAACTGATGATGG ATGATTTCGTGAGGTTGCACAATCACCTGGGAAAAGTATGACCACCCCTGCATTCAAAAT GCGTATGGAATCATCTTATTGGTTTGCTCGCTGGACTATGCATGCCTCTGAAGTGATTTT GTTCCCAGCTAGAGGGCACTGCAACTTGCAGGTAAATCACATACATAAAAGATGGCAAGT GGATTGGCTCAAGATATTGTTCTTTAACCTGATACAACAGATAATTCTCCAAATCATTTC AGATCATCCTTGCTGACAGTGACCGCCTAGTATTCTTCAGCAGTCCCACAGCCTTCACCG CAACATAATTGGTGGCACAGCTTCAGCCCACGGTGTCCTT