Barley RTD

Transcript HORVU6Hr1G011910.20

Transcript IDHORVU6Hr1G011910.20
Gene IDHORVU6Hr1G011910

Transcript Data

|Exon Structure|
|Homologues|
|Barley GBrowse|
|CDS Sequence|

Barley RTD

Links

Exon Structure of HORVU6Hr1G011910.20

Chromosome	Exon	Start	Stop	Direction
chr6H	1	22229650	22229475	+
chr6H	2	22229842	22229786	+
chr6H	3	22231287	22231195	+
chr6H	4	22231497	22231402	+
chr6H	5	22232507	22232423	+
chr6H	6	22233100	22233048	+
chr6H	7	22233288	22233205	+
chr6H	8	22233498	22233388	+
chr6H	9	22233586	22233558	+

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os02g03050.1	+3	1e-120	343	165/199 (83%)	protein\|dimethyladenosine transferase, putative, expressed
TAIR PP10	AT1G01860 @ ARAPORT AT1G01860.1 @ TAIR	+3	3e-88	265	155/255 (61%)	Symbols: PFC1 \| Ribosomal RNA adenine dimethylase family protein \| chr1:304439-306275 REVERSE LENGTH=343
BRACH PP3	Bradi3g02232.4.p	+3	1e-138	395	232/260 (89%)	pacid=32819652 transcript=Bradi3g02232.4 locus=Bradi3g02232 ID=Bradi3g02232.4.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

CDS Sequence (784 bp)

>HORVU6Hr1G011910.20 784 150831_barley_pseudomolecules
GTTGGGCTGCGCTCACTGTGCTGCAGAACTACATGCTGAACGCGAGGGTGAACGAGGAGC
TGGTGGCGGCGGCGGGGGTAGAGGTAGGGGACGTCGTGCTCGAGATAGGACCCGGGACGG
GCTCGCTCACCGCCGCTCTGCTCGCCGCCGGCGCCACCGTCGTCGCCGTCGAGAAGGATA
AGCATATGGCTACACTTGTGAGAGATAGGTTTGGATCCACAGAGCAATTGAAGGTCATTG
AAGAAGATATTACAAAATTTCACGTTCACTCCCATTTTCTCCCTATCCTGGACGAGAAAT
CCCGTGGCACGAAAAAATATGCCAAGGTTGTAGCAAACTTACCATTCAATGTCAGCACTG
AAGTTGTCAAACAAATTCTCCCAATGGGAGATGTTTTCTCTGTCATGGTGCTCATGCTTC
AGGATGAAGCAGCGCTACGCCTTGCAAATGCTTCAATACAAACACCAGAGTACCGACCTA
TCAATGTGTTTGTGAATTTCTACTCTGAACCCGAATACAAGTTCAAGGTAGAGAGGGCCA
ACTTTTTCCCTCAACCGACGGTTGACGGTGGTGTTATAAGGTTTAAAATAAAGGATGCTG
GGGAGTATCCGCCTGTTAGTTCTAACAAAAGTTTTTTTTCAATGGTGAACTCCGCGTTCA
ATGGGAAGCGCAAGATGCTTCGGAAATCACTTCAACACCTATATTCTTCTGTTGAAATCG
AGGCCGCTCTTACCAATATCGGTCTTCCGCCTACAGCTAGACCGTCGGAACTGATGATGG
ATGA