- Transcript HORVU6Hr1G011910.1
- Transcript IDHORVU6Hr1G011910.1
- Gene IDHORVU6Hr1G011910
Barley RTD
Exon Structure of HORVU6Hr1G011910.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 22229409 | 22229164 | + |
| chr6H | 2 | 22229650 | 22229501 | + |
| chr6H | 3 | 22229842 | 22229786 | + |
| chr6H | 4 | 22231287 | 22231195 | + |
| chr6H | 5 | 22231497 | 22231402 | + |
| chr6H | 6 | 22232507 | 22232423 | + |
| chr6H | 7 | 22233100 | 22233048 | + |
| chr6H | 8 | 22233288 | 22233205 | + |
| chr6H | 9 | 22233498 | 22233388 | + |
| chr6H | 10 | 22233617 | 22233558 | + |
| chr6H | 11 | 22233733 | 22233711 | + |
| chr6H | 12 | 22233851 | 22233825 | + |
| chr6H | 13 | 22234166 | 22234113 | + |
| chr6H | 14 | 22237825 | 22237659 | + |
| chr6H | 15 | 22238974 | 22238862 | + |
| chr6H | 16 | 22239292 | 22239057 | + |
| chr6H | 17 | 22239749 | 22239402 | + |
| chr6H | 18 | 22239862 | 22239832 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03040.1 | +1 | 2e-124 | 371 | 220/261 (84%) | protein|RNA recognition motif containing protein, expressed |
| TAIR PP10 | AT1G01860 @ ARAPORT AT1G01860.1 @ TAIR |
+1 | 2e-99 | 308 | 177/288 (61%) | Symbols: PFC1 | Ribosomal RNA adenine dimethylase family protein | chr1:304439-306275 REVERSE LENGTH=343 |
| BRACH PP3 | Bradi3g02232.3.p | +1 | 7e-155 | 451 | 261/287 (91%) | pacid=32819654 transcript=Bradi3g02232.3 locus=Bradi3g02232 ID=Bradi3g02232.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2034 bp)
>HORVU6Hr1G011910.1 2034 150831_barley_pseudomolecules GAAAGAAAAAAAAAGATATCGCCTTCGAAAATGCTGGCGCTCACTTCCTTATCCCCGCGG CCTTCCCCGTCTCCGGCCACGCCTCCTCACCGCCGGCCGCCGCCGCCCCGCGGCCGTATC CGGCCCACATCCGCCGTCGCAACGGCCGCATCCGACGGCGGCGGCGCGGGCGACGACTAC CACTCGACCATCCGCTCACTCAACTCGCACGGCCGCCGCCACGTCCCCCGCAAATCCCTC GGTCAGAACTACATGCTGAACGCGAGGGTGAACGAGGAGCTGGTGGCGGCGGCGGGGGTA GAGGTAGGGGACGTCGTGCTCGAGATAGGACCCGGGACGGGCTCGCTCACCGCCGCTCTG CTCGCCGCCGGCGCCACCGTCGTCGCCGTCGAGAAGGATAAGCATATGGCTACACTTGTG AGAGATAGGTTTGGATCCACAGAGCAATTGAAGGTCATTGAAGAAGATATTACAAAATTT CACGTTCACTCCCATTTTCTCCCTATCCTGGACGAGAAATCCCGTGGCACGAAAAAATAT GCCAAGGTTGTAGCAAACTTACCATTCAATGTCAGCACTGAAGTTGTCAAACAAATTCTC CCAATGGGAGATGTTTTCTCTGTCATGGTGCTCATGCTTCAGGATGAAGCAGCGCTACGC CTTGCAAATGCTTCAATACAAACACCAGAGTACCGACCTATCAATGTGTTTGTGAATTTC TACTCTGAACCCGAATACAAGTTCAAGGTAGAGAGGGCCAACTTTTTCCCTCAACCGACG GTTGACGGTGGTGTTATAAGGTTTAAAATAAAGGATGCTGGGGAGTATCCGCCTGTTAGT TCTAACAAAAGTTTTTTTTCAATGGTGAACTCCGCGTTCAATGGGAAGCGCAAGATGCTT CGGAAATCACTTCAACACCTATATTCTTCTGTTGAAATCGAGGCCGCTCTTACCAATATC GGTCTTCCGCCTACAGCTAGACCGTCGGAACTGATGATGGATGATTTCGTGAGGTTGCAC AATCACCTGGGAAAACTAGAGGGCACTGCAACTTGCAGATCATCCTTGCTGACAGTGACC GCCTAGTTGGAGGCAGAAATGTAGGGATCAAATGTCTGTCAGAACAATCTGAAGACCAGT TTCTCTGACTTGTATCTTCGAATAGGTTTGGGGAAGATCTGTTTATACAGCAACACCAAC ATGAGGCCAATTTTCTGCGGGAACCTTGACTATGATGCCCGCCAATCTGAAGTCGAGCGT CTTTTTGGCAAATATGGAAGAGTGGAGCGAGTTGACATGAAGACAGGATTTGCGTTCGTC TACATGGAAGATGAACGTGATGCTGAAGATGCTATCCGTAGACTTGATAGAACTGACTTT GGTAGAACAGGGAGGAGACTGAGAGTCGAATGGACAAAGGAGGATCGCAGTGGTGGTCGG AAAGGAAATGGAAAGAGATCTCCAAGCAGCGTGAAACCAACCAAAACCTTGTTTGTGATC AACTTTGATCCAATCAACACAAGGACAAGAGATCTGGAGAAGCACTTTGATCTGTATGGC AAGATTGCAAATATCAGAATCAGAAGGAACTTTGCATTTGTCCAGTATGAAACACAGGAG GATGCTACTAAAGCTCTGGACGGTACTAATGGAAGCACTGTGATGGACAGGGTGATTTCT GTTGAGTATGCGCTTCGTGACGATGATGAAAAAAGGAACGGGTACAGTCCAGACAGGAGA GGAGGCCGTGATAGGTCTCCTGACAGAAGGGACAATCGTGGTAGGTCGGCAAGTCCTTAT GGCAGAGGGCGGGAAAGGGGCAGCCCAGACTATGGCAGGGGCAGGGAGAGGGGCAGCCCG GACTATGGCAAGGGCGGTGCCAGAGATAGTCCTGACTATGTCCGTGGTGGAAGCCCGTAC GGCGGCAAAGGGGATGACAGGGCTAGCCCCAAGTATGACCGTGAACGCCGTGAAGCCAGT CCTGCCTATGACAGGCGCCGCAGCCGCTCGCCTGCAAGGGAAGATAGGGACTGA