- Transcript HORVU6Hr1G000280.9
- Transcript IDHORVU6Hr1G000280.9
- Gene IDHORVU6Hr1G000280
Barley RTD
Exon Structure of HORVU6Hr1G000280.9
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 707435 | 707361 | + |
| chr6H | 2 | 707678 | 707609 | + |
| chr6H | 3 | 708353 | 708300 | + |
| chr6H | 4 | 709178 | 708511 | + |
| chr6H | 5 | 709652 | 709277 | + |
| chr6H | 6 | 710469 | 710377 | + |
| chr6H | 7 | 711410 | 710914 | + |
| chr6H | 8 | 712086 | 711540 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g10980.1 | +3 | 4e-44 | 159 | 91/206 (44%) | protein|OsFBX379 - F-box domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g00580.1.p | +3 | 2e-59 | 170 | 101/212 (48%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2380 bp)
>HORVU6Hr1G000280.9 2380 150831_barley_pseudomolecules TGGACAGAAAGGAGGAGCGGCGCCGCCGGCGACCTCCCCTCACCCCGCCGCCCCGTCCCC GTCGGTCCGGTCGAGCGGCGCAGAGAGAGGGAGAGGAGCGGGTGGCGCCGACGGATCCCG CCGAGGCTCCCCAAGGCGGCCCATGCAGTGGAGAGAGAGGAGGGCTGATGGGTCCTGCTG AGGTTCCCCAAATCCAATGGGCCGGCCCCATTCCCAGCTCGCCGCGCGTGTACGGCAGGA AGCTGTGGCGCTCCGTGTCCAAGGTGCTCGGCAACGACAATCTCCTTGCCGAGATCCTCG TCCGTCTCTCTTCGAAGCCGTCCTCGCTCCCCCGCGCGTCCGCCGTGTGCAAGCGCTGGC GCAACATCCTCTCCGACCCCGAGTTCCTCAAACGCTTCCGCAAGCACCACCGGAAGCCTC CTCTGCTCGGCTTCTTTGAAGGTTATGCTAACCGCTTCACCCCTGTCATGGACTCGCCCG ACCGTATCACTGCTGCCTGCTTCTCCATGCCCAAGAGAAACACACCCTACAACGACCATA GAGAATACATGGGCTGCCGCCATGGCCTTGCTGTCCTGGTCAACAAGCAAGAGCGCAAGA CCTTCGTGTGGGACCCTCTCACTGGCCGACAGCACAGCGTGGCTTTTCCACCCGGGCTCG ATGACGCCTTTACAGGGAATTTCTGTATGTGGCGCGGCGCGGTGTTGTGTGCTGATGCTG AAGATGGGCATGTGCACGGAGATTGCTTCTCGAGTCCGTTTAAATTGGTCTTGGTCTGCT GCGGTGGATACAATACACAGGCATTTTGCTCTGTCTATGACTCGGTATCTGGTGTTTGGG GAGGTGTTTTCTCGACCGCGATATCAAAGCCTTCATGTGATCGAGAAGCCGGCATACTAC TATGTTACCGACGGGTGTTTTCAGCTCTTACGGATGGAGGGTGGTGGACTTGGCCTTGCT GTTTTGTTGGGCCTGACCATCCAATTGTGGGAGAGGAAATCTAACTGTGATGGCGTCGTC GGGTGGGTGTTGCTGCAGAAAACCATTCCGCTGGAGGGGATGTTTCCAAAAATGGATTCT GTACGTTTCGTCGGGTATGATGAGGACACAAATGTGATTGTTCTCACTTCAATGACTGGC AACTTCACACTCCAGCTTGACTCGATGCAGATCAAACATATTGTTAAAAGAAACAACATA TGTTACGACCCGTTTTATCCCTACACCAATTTCTATACTACAGCTAGGCAAGGCAACTTG GCGGGAAGGGATGGATCTGGAACTAATTGTGATCGGACCAGATCTGCTAACGTGCTACCT TGGTCGAATAATTTAGAGGTATTGAGAGTTAAATTCGGGTTGCTGAGACGCAGCCATGGC TAGTTGGCGCAGGGAAGTTCTTCTATTCTGCTGAGATGCAGACATGGCTAGTTGGTGCAG TGAAGTTCTTCTTCTATTTTGTATGGTGTGGTCGACGCTTAAAATGTCCTGCTATGTAGC CTGTTGGATCCTCTACTATGTATGCTGTGGCAGATGCGGTGGTCGATGCTGAGACGTCTC CTCTATGTTGTAGGGTCGTGGTCCGTGAATTGAATTTATCGGGTTTAATCATCCGAACTC TTATATATTTGTGTGCCTAGTGACTTGTCGAGTTGGTTCGGTTAATGCTTTGCTCTGTGA TGCGAGGTACTAGCAAGGTGGATGGACAAGAAGCAGTGGGCTCTGGCACTTTACAGAGTT TCTTTGTGAAGTCCCTAACCGCGAGTCTTGCTAGTGATCTAACTGTGATAGTGCTGGTCA CATCACCACTTGCAGCAGAGGCAGACAATGCTTCTTCAGTTGGATTTCCGGATTGCAATG CTGGCTCTTTCTTGGAGGAGACAAGTTAAAAAATGTTGTCGGTTTTGGTTTCAACTTCAA AGAGTGTTGTGACTTGGCTCTTAATCAGAAGAGTTGTGAGATTTTATTTGAACTTTGTTT GACTGGATAGAATTACTGATTTTTCCTTAATTGCTTGTCCTATTCTGGGTCTGTCATAGA GAATTTTCTTGTCCTGAGTTACATTGAAGATATTTTCCAGATCTTGGACTTGCCATTCCC GATACTTGTCCAATAAGTCAGCCCTCCAGGAAAAACACAGACTACATTGGCCTGGCGAGA GAGCCAACCGGTGATTGCCACAGACCACATTGGTCTGGCGAGTTAGCCAACCGGTGATTG CCACGACGTTTGTTTTTCTTGGGACCGCACCTTGGTTTCTTGGGACCGCACCTTGGCTCC TGGGGCTACATGTGCATAGGGAAAATGCTGTCTTGGTGGTTGTTGCTGTCAAAACCGAAA TGTTTGGCCATGATATTCAGTATTTTTAACATAGTTTCAG