- Transcript HORVU6Hr1G000280.3
- Transcript IDHORVU6Hr1G000280.3
- Gene IDHORVU6Hr1G000280
Barley RTD
Exon Structure of HORVU6Hr1G000280.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 707435 | 707321 | + |
| chr6H | 2 | 707678 | 707609 | + |
| chr6H | 3 | 708353 | 708300 | + |
| chr6H | 4 | 709652 | 708511 | + |
| chr6H | 5 | 710469 | 710377 | + |
| chr6H | 6 | 711411 | 710916 | + |
| chr6H | 7 | 712009 | 711541 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g04700.1 | +1 | 4e-64 | 221 | 153/375 (41%) | protein|OsFBX361 - F-box domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g00580.1.p | +1 | 2e-88 | 286 | 173/382 (45%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2439 bp)
>HORVU6Hr1G000280.3 2439 150831_barley_pseudomolecules CCTCAGTCCCCACTCTACACTCCTCTCAGGAGCTCGCGGATGGACAGAAAGGAGGAGCGG CGCCGCCGGCGACCTCCCCTCACCCCGCCGCCCCGTCCCCGTCGGTCCGGTCGAGCGGCG CAGAGAGAGGGAGAGGAGCGGGTGGCGCCGACGGATCCCGCCGAGGCTCCCCAAGGCGGC CCATGCAGTGGAGAGAGAGGAGGGCTGATGGGTCCTGCTGAGGTTCCCCAAATCCAATGG GCCGGCCCCATTCCCAGCTCGCCGCGCGTGTACGGCAGGAAGCTGTGGCGCTCCGTGTCC AAGGTGCTCGGCAACGACAATCTCCTTGCCGAGATCCTCGTCCGTCTCTCTTCGAAGCCG TCCTCGCTCCCCCGCGCGTCCGCCGTGTGCAAGCGCTGGCGCAACATCCTCTCCGACCCC GAGTTCCTCAAACGCTTCCGCAAGCACCACCGGAAGCCTCCTCTGCTCGGCTTCTTTGAA GGTTATGCTAACCGCTTCACCCCTGTCATGGACTCGCCCGACCGTATCACTGCTGCCTGC TTCTCCATGCCCAAGAGAAACACACCCTACAACGACCATAGAGAATACATGGGCTGCCGC CATGGCCTTGCTGTCCTGGTCAACAAGCAAGAGCGCAAGACCTTCGTGTGGGACCCTCTC ACTGGCCGACAGCACAGCGTGGCTTTTCCACCCGGGCTCGATGACGCCTTTACAGGGAAT TTCTGTATGTGGCGCGGCGCGGTGTTGTGTGCTGATGCTGAAGATGGGCATGTGCACGGA GATTGCTTCTCGAGTCCGTTTAAATTGGTCTTGGTCTGCTGCGGTGGATACAATACACAG GCATTTTGCTCTGTCTATGACTCGGTATCTGGTGTTTGGGGAGGTGTTTTCTCGACCGCG ATATCAAGTATAATTTCTATGTTAAGGCCCAGCATCCTAGTTGGTAATACAATTTGCTGG TTGATTTCTGGAGGTGATATCCTTGTGTTTGACTTCGAATGTCAGAGCCTTCATGTGATC GAGAAGCCGGCATACTACTATGTTACCGACGGGTGTTTTCAGCTCTTACGGATGGAGGGT GGTGGACTTGGCCTTGCTGTTTTGTTGGGCCTGACCATCCAATTGTGGGAGAGGAAATCT AACTGTGATGGCGTCGTCGGGTGGGTGTTGCTGCAGAAAACCATTCCGCTGGAGGGGATG TTTCCAAAAATGGATTCTGTACGTTTCGTCGGGTATGATGAGGACACAAATGTGATTGTT CTCACTTCAATGACTGGCAACTTCACACTCCAGCTTGACTCGATGCAGATCAAACATATT GTTAAAAGAAACAACATATGTTACGACCCGTTTTATCCCTACACCAATTTCTATACTACA GCTAGGCAAGGCAACTTGGCGGGAAGGGATGGATCTGGAACTAATTGTGATCGGACCAGA TCTGCTAACGTGCTACCTTGGTCGAATAATTTAGGTATTGAGAGTTAAATTCGGGTTGCT GAGACGCAGCCATGGCTAGTTGGCGCAGGGAAGTTCTTCTATTCTGCTGAGATGCAGACA TGGCTAGTTGGTGCAGTGAAGTTCTTCTTCTATTTTGTATGGTGTGGTCGACGCTTAAAA TGTCCTGCTATGTAGCCTGTTGGATCCTCTACTATGTATGCTGTGGCAGATGCGGTGGTC GATGCTGAGACGTCTCCTCTATGTTGTAGGGTCGTGGTCCGTGAATTGAATTTATCGGGT TTAATCATCCGAACTCTTATATATTTGTGTGCCTAGTGACTTGTCGAGTTGGTTCGGTTA ATGCTTTGCTCTGTGATGCGAGGTACTAGCAAGGTGGATGGACAAGAAGCAGTGGGCTCT GGCACTTTACAGAGTTTCTTTGTGAAGTCCCTAACCGCGAGTCTTGCTAGTGATCTAACT GTGATAGTGCTGGTCACATCACCACTTGCAGCAGAGGCAGACAATGCTTGTTCAGTTGGA TTTCCGGATTGCAATGCTGGCTCTTTCTTGGAGGAGACAAGTTAAAAAATGTTGTCGGTT TTGGTTTCAACTTCAAAGAGTGTTGTGACTTGGCTCTTAATCAGAAGAGTTGTGAGATTT TATTTGAACTTTGTTTGACTGGATAGAATTACTGATTTTTCCTTAATTGCTTGTCCTATT CTGGGTCTGTCATAGAGAATTTTCTTGTCCTGAGTTACATTGAAGATATTTTCCAGATCT TGGACTTGCCATTCCCGATACTTGTCCAATAAGTCAGCCCTCCAGGAAAAACACAGACTA CATTGGCCTGGCGAGAGAGCCAACCGGTGATTGCCACAGACCACATTGGTCTGGCGAGTT AGCCAACCGGTGATTGCCACGACGTTTGTTTTTCTTGGGACCGCACCTTGGTTTCTTGGG ACCGCACCTTGGCTCCTGGGGCTACATGTGCATAGGGAA