Transcript Data
Barley RTD
Links



Exon Structure of HORVU5Hr1G121310.4

ChromosomeExonStartStopDirection
chr5H1659419101659419075+
chr5H2659419657659419334+
chr5H3659420969659420632+
chr5H4659422010659421811+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g63300.1 +3 3e-164 464 247/285 (87%) protein|NLI interacting factor-like phosphatase, putative, expressed
TAIR PP10 AT5G11860 @ ARAPORT
AT5G11860.4 @ TAIR		 +3 2e-120 347 196/254 (77%) Symbols: | SCP1-like small phosphatase 5 | chr5:3822024-3823395 REVERSE LENGTH=305
BRACH PP3 Bradi4g02010.1.p +3 2e-176 494 262/286 (92%) pacid=32785818 transcript=Bradi4g02010.1 locus=Bradi4g02010 ID=Bradi4g02010.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (889 bp)

>HORVU5Hr1G121310.4 889 150831_barley_pseudomolecules
CTTTCCCTGACTAATCTAGACTGCGTGTTCCTGTGCAATCAACATGTGGAAATACGAAGC
GTGCAAACGATGAATACAGTGAATTGGGTAGTCTTTCTCCCGAAGTGTCTGCTATATATC
TTGCAATGCAGCACTCCAAACTGGAGTGTATTGATGAACAAAGTCAAGATTCGATCTCAA
CAGATGAGTGCGCTGATCCTGATGAGGCTGAGGAGCTTGATGAGTTTGACCCTTATAGCT
TTATAAAGGATTTGCCTGAGTTATCTATGGTTGTACCCAAGTTTCGACCCGTTCTTCTTC
CAAAGCAAACTCGGAGCTGCCCTAGAACCACCCTTGTTCTTGATCTGGATGAGACACTGG
TGCATTCTACTCTTGAGCCCTGTGAAGATTCTGATTTCACTTTCCCAGTTCGTTTTAATC
TCAGAGATCACACAATCTATGTACGGTGTCGTCCATATCTGAAAGACTTCCTGGAGAGAG
TAGCCAGCATGTTTGAGATAATCATCTTCACGGCTAGTCAAAGTATCTATGCAGAACAAC
TGCTTAATGTTCTTGATCCGAAAAGAAGGTTGTTCCGTCATCGAGTTTATCGCGAGTCTT
GCGTCTACGTGGAGGGCAACTACTTAAAGGATCTATCAGTTCTCGGACGTGACTTGTCTC
GTGTTGTCATAGTTGACAATTCTCCACAGGCCTTTGGGTTCCAGTTGGACAATGGCATAC
CGATCGAGAGTTGGTTCGACGACCCAAACGACAAGGAGCTCCTAGCACTGCTACCGTTCC
TGGAAAGCCTGGTTGGTGTGGAAGATGTCCGGCCATTCATCGCAACTAAGTTCAACCTCC
GCCAGAAGGTGGCCAGCGCGACTTCCCTTGCGATGCACTTCTTTCCTAA