- Transcript HORVU5Hr1G121310.1
- Transcript IDHORVU5Hr1G121310.1
- Gene IDHORVU5Hr1G121310
Barley RTD
Exon Structure of HORVU5Hr1G121310.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 659416282 | 659415973 | + |
| chr5H | 2 | 659417266 | 659417089 | + |
| chr5H | 3 | 659417758 | 659417637 | + |
| chr5H | 4 | 659418191 | 659418098 | + |
| chr5H | 5 | 659419657 | 659419334 | + |
| chr5H | 6 | 659420969 | 659420632 | + |
| chr5H | 7 | 659422449 | 659421811 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g63300.1 | +2 | 0.0 | 587 | 326/446 (73%) | protein|NLI interacting factor-like phosphatase, putative, expressed |
| TAIR PP10 | AT5G11860 @ ARAPORT AT5G11860.4 @ TAIR |
+2 | 7e-117 | 352 | 196/254 (77%) | Symbols: | SCP1-like small phosphatase 5 | chr5:3822024-3823395 REVERSE LENGTH=305 |
| BRACH PP3 | Bradi4g02010.1.p | +2 | 0.0 | 674 | 355/411 (86%) | pacid=32785818 transcript=Bradi4g02010.1 locus=Bradi4g02010 ID=Bradi4g02010.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2005 bp)
>HORVU5Hr1G121310.1 2005 150831_barley_pseudomolecules CATCACTCCCCGAAGCGTTGCGCCGCGGCTATAGGCTCTCTCCCCTCTCCCCCGTGCGCG ACAAGCGGCTAGGGTTTCGCCCTCCCAACCCACCCCACCCCCGCTCCGCCGTCGCCCCCC ACCCTCGCCGTCGCCGCCCCGCCTACCGCATCCCGCATACAATCTCCGACGCCGTCCCCG ACCGCGTCCTCCCTCTGCCGCCGGCCACTACCACGGAGCCCCCGCGCCAGCAGATCGACG CCGCCGGGCCCGTCCACCCCGTCTCGCCGCCCGCCAGCTCGTCCCCGGCCTCCAGCTCGC CTCCGCCCAGGCAAGAAGTCTTCTTGATTGAAGGATGCCGACAAGAAAAAAAGGACCTGC AAGAAATGCAACTGTCGAGCATGTTAATACGAAAACTAGCAGGCAACCTAGAAGACCCAC TCAGACCGCAGCTGCTGATAAGAAAGTCAATGATCTAATTACTTCTTCTTCCAAAAAGCA GAAACCTGCCGGAGACCCTCTGAAGAAAAACCAAGTTCTAAGCGGTGGAAGAAAATTAAC ATCTCTATATGATTCTGAAACTGAAAATGAAGTGGCTGATGTGCCAAGTAGTAGTATGCT TGATCACAAGCAGTCTCACGGAGATGATGAAGAGCCATGTGAGAACATATTTTCTCAACC ATTCCACCATCATAATGAAGACGACAGTGATGGCTTGAGCAAAGTTCCTGTGCAATCAAC ATGTGGAAATACGAAGCGTGCAAACGATGAATACAGTGAATTGGGTAGTCTTTCTCCCGA AGTGTCTGCTATATATCTTGCAATGCAGCACTCCAAACTGGAGTGTATTGATGAACAAAG TCAAGATTCGATCTCAACAGATGAGTGCGCTGATCCTGATGAGGCTGAGGAGCTTGATGA GTTTGACCCTTATAGCTTTATAAAGGATTTGCCTGAGTTATCTATGGTTGTACCCAAGTT TCGACCCGTTCTTCTTCCAAAGCAAACTCGGAGCTGCCCTAGAACCACCCTTGTTCTTGA TCTGGATGAGACACTGGTGCATTCTACTCTTGAGCCCTGTGAAGATTCTGATTTCACTTT CCCAGTTCGTTTTAATCTCAGAGATCACACAATCTATGTACGGTGTCGTCCATATCTGAA AGACTTCCTGGAGAGAGTAGCCAGCATGTTTGAGATAATCATCTTCACGGCTAGTCAAAG TATCTATGCAGAACAACTGCTTAATGTTCTTGATCCGAAAAGAAGGTTGTTCCGTCATCG AGTTTATCGCGAGTCTTGCGTCTACGTGGAGGGCAACTACTTAAAGGATCTATCAGTTCT CGGACGTGACTTGTCTCGTGTTGTCATAGTTGACAATTCTCCACAGGCCTTTGGGTTCCA GTTGGACAATGGCATACCGATCGAGAGTTGGTTCGACGACCCAAACGACAAGGAGCTCCT AGCACTGCTACCGTTCCTGGAAAGCCTGGTTGGTGTGGAAGATGTCCGGCCATTCATCGC AACTAAGTTCAACCTCCGCCAGAAGGTGGCCAGCGCGACTTCCCTTGCGATGCACTTCTT TCCTAATGGGGAGTGTGCCAGCTGAAGGGCTCCCGGAGAAAACAGGCAATCAAGTGCTCG AAAGGATACCTGAAAATTTAGAATCCTTTGTTGTTCTGGTACAATCATGTGTCATTTAAT TTCGAACCGCCAGACGGACAGAGTCATAATTTGGGCTGTTGTAAGTTTCTAAAAACCGGT AAACCTTAGGGAACCTTGTACAAGCAGTAGCCAGGACCCAGAGGGGTCACTGCCCAGCAT TGTAATAGACCAGCGGATATTTGTCGGAATTTGCTGCCCAGCATTGTAATAGGCCAGCAG ATATTTGTCGGAATTTACTGCTAAGCACTGTAATAGCCCAGCGGATATTTGCCAGAATTT GTTGCGTTCAACGCAGTTATGTCGCAGTCTGTAGTTGTCAAGTCTAGTAAAGAAGTGGGC CAGTGAGGGATTATGCCCATTTGAG