- Transcript HORVU5Hr1G103280.4
- Transcript IDHORVU5Hr1G103280.4
- Gene IDHORVU5Hr1G103280
Barley RTD
Exon Structure of HORVU5Hr1G103280.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 615390084 | 615388671 | - |
| chr5H | 2 | 615390389 | 615390163 | - |
| chr5H | 3 | 615390625 | 615390551 | - |
| chr5H | 4 | 615390934 | 615390818 | - |
| chr5H | 5 | 615392416 | 615392324 | - |
| chr5H | 6 | 615392680 | 615392630 | - |
| chr5H | 7 | 615394192 | 615392820 | - |
| chr5H | 8 | 615394470 | 615394336 | - |
| chr5H | 9 | 615394924 | 615394575 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g35150.1 | +2 | 4e-109 | 330 | 165/225 (73%) | protein|splicing factor U2AF, putative, expressed |
| TAIR PP10 | AT1G10320 @ ARAPORT AT1G10320.1 @ TAIR |
+2 | 3e-66 | 239 | 109/143 (76%) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:3384164-3388373 REVERSE LENGTH=757 |
| BRACH PP3 | Bradi3g45900.1.p | +2 | 9e-159 | 395 | 197/242 (81%) | pacid=32822846 transcript=Bradi3g45900.1 locus=Bradi3g45900 ID=Bradi3g45900.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3835 bp)
>HORVU5Hr1G103280.4 3835 150831_barley_pseudomolecules CACGTGACTTTACAGATTCTGATTGTCGATCGGATATTTTTGTTCCTATCCTCTTGATAC ATCATATATGCATGTTGTTTGATAACTCAATGCATGTGTTCATCGAAAATGTTATACTAG CTGGTGAAATGTTTGAGAATATGTTACGTTCTAATGGGTCCTGGTTATTATTGTTTCTTG GGCTATTTCAGTATAACGATGACCACCGAGACGAGACAGAAGAAGATGGGGAGTGGGAGT ATGTTGAAGATGGACCAGCAGAGATCATATGGCAAGGAAATGAGATCATTGTGAAGAAGA AAAAGGTCAAAATACCAAAGAAGGCAGAGGCTAAACCACTAAGTCAAGAGGAAGAGAGAC CTACATCAAATCCGCTGCCACCTCAGTCTGTAGCTGTTGATTCTCAGAGGAGAGAACCTT CCTTGTCTGCTCGAGAACTACTTGAGAAAGTTGCTCAAGAGACTCCAAATTTCGGAACTG AACAGGATAAGGCCCATTGCCCATTTTACCTCAAAACAGCAGCTTGCCGCTTTGGAGTGC GCTGCAGCAGAGTTCACTTCTACCCTGACAAATCATGCACATTGCTCATGAAAAACATGT ATAATGGTCCGGGCCTTGTTTTGGAACAAGATGAAGGGCTTGAGGTTTGTTAGAGGACAA TCCCTTGCAAACAAATTCGTATCCTGAACTATTCTGTCTTTTGGCACAACCTTTTAGTAT CCTGAACTCATTACAATACTTATTCCCGACCTACTCATTGTTTTAAGATTATACTCCCTC GCTTTAGGTTTGTTAGGCTCATCTCAAAAAATCTGAATTGTTAGTTTTGGAAGGCCCCTT GCTTTAGGAATAGGCAAATATTAAGTACAGCCACATTAATTTCTATCTAAATTTGGTCCT CAATGTGGGGTCAACCAATGCATGAAGGAGGAGAGTGACCATGCATGCTGCATCAGTACA TGGTCCATCACTTAATTAGGTACTCCTTGGTTACAGTGATTTTTTGGATGAGCCAAATGG ATTAAGCTTAAACTTTGTGCTGTACAATGAATAACCGTAGGTAGAAACTAGCATAATGCC CGTGCGTTGCTATGAATCCATAAAAAGACCACTGTCTTAGGAAATCGTCAAAGGATGATG GTGTCTTGGGGTTGTTGCATGGTTCACGATTGGAAAGAGAGCAAAAATGTAACGAAAGAT CGTGTTGCAGTCCTTGAAAAATCAAGCGACCATAGTAGGTACTTTGCAAGATTTATAGTG AGATAACATTTTGAATTTGAAGCATAAGAGGATGGGCATGAGTAAGTTGAATGCACAAGA TCGTGAAATTGCAATTTGTTTGCTCTCTTCTGCTATGATATAGAGCTGTAAGAATTGATT GGGCAGAGACTAAAATCGAGACCATGATTTTGAGTTGGAGTTCCATACTTGCATTTACAA TTTGCATTTTTGTCAGAGTATTATTCTCACATTATGGTAGGTGTATTTGTTTACTTGGGA TAGGTCTCACACCAAGTGGAAGTAACATTTGTTTTTTAAAGGTTGCTAGTCTCACATATG AGTACAAGTGCACTTGTTTATTTCCGTGGCCCCACATCTGAACTCACCACCAACTCCAAT ATTTATAAGTAGGAAAGATAACTGGTTACTTTAATTCTTTTGTAAATTCCCTTCCAAGTG TTAAAATATGCCTGTTGCTTTTTAGAAATTTTGCTTGATCTTCTGGCTACTCTCAGACCT GTGACATAATGCATGTTCATTGATGCATTCTCCAAGAATTCCCTCTCGAGGCAAGCAGTG ACCAACCACCTAGTTGGTCTCATTTGATTGGAGACGCCCTGAACTTTCATCTGCTACCTA CTTGTGAGATGTTCTTGTATTGGACGTGTTGATGATCATTAGGTGACAGTTTACAGACGA AGAGATTGAACAGAGCTATGAAGAATTTTATGAAGACGTGCACACAGAATTTCTGAAATT TGGTGAACTTGTCAACTTCAAGGTATGTAGAAATGGATCGTTCCATCTTCGAGGAAATGT CTATGTGCATTATAAAGCTTTGGATTCAGCTCTTCTTGCCTACAACAGCATGAATGGTCG ATATTTTGCTGGGAAGCAGATAACATGCGAGTTTGTTGCTCTGACGAAATGGAAGTCTGC GATCTGTGGTGAGTACATGAGGTCAAGATTCAAGACATGTTCACATGGAGTTGCTTGTAA TTTCATTCATTGCTTTCGTAATCCTGGTGGAGATTATGAGTGGGCTGATTGGGACAATCC TCCACCTAAATACTGGACTCGGAAGATGGCTGCTCTGTTTGGACCCTCAGATGATGCTGT TTTTGACAAGGCGAGTGATGCCCCAGATTTCGAACGGTTACACAGTTCAGACAGGAAGAG ACTGAGAAGTTCTGATGGCAGGTATATTTCAAGTAGACATAGGGATGGAGATGCACATAA ACGGCACTCATCAAGAGTTTTTTCACATTCGAAGCAAGAACAGAGCAATTATATCATGAA ATATGGGCATACTCGACATAGTAGAGAACCATCTACAGCAAAAAAGCAACGAGGCCATGA GATTGAAGATGATATTGGCAGATACTGTTCGCCCGTGGAAAATGAAAGAGTGNNNNNNNN NNNNNNNNNNAAAGAGTGTCCCAAACACACAAGCGTGAAGAGAAACATAGAGATGGCCAT GGCGATGGAGCACGTGGAGACAATGGTAAAATCAAGTCCAGGAAGCACAGATCTGAACAG CACGAAAGTCTGGAGTCTGGATGTTCTGATTGGCCTTCAGAATTTGCTGATGCAGGCACG AGCAGAAGTCCTTCATGCAGCAAGTCCACCAACAGGTACAGTAATCACAATAGGAGTCGG GGGCAATCCTTGGATGATTCCAATCTTGAAAGGGGCTACTCCACTGCGGACAAATCATCA GGGAAAGCGCACATTGCCAAAAGTAGCTCGAGACATTACGTAGAAGATGACTCTTATGGT GAGAAAGGTAGTGGAAGAGACAAATCTGGAAAGCACAGTGATCATTGTGATGACCCTGAT GATAGATGGCTAGCAACAACTAGTGACGTTGATTCAGATGGAGAAACTCAATTCCTGAGA TCAAGCAGTGGAATTGGTAAAGGTGGAAAGAATGATAATGCTCCTCGAGACGAGGATGAT CGTTGTCAAAGGTCCAGCAGTAGGTCTGCTAGGTCAAGAGCGAACGAGACGAAGAGCAGT AGGAAGAGGAAGAAGCATCACAGTGAAATCAGGAAGAATAGCGATAGTGATGACAGTCCG TCAGACTCTAGTGACATTAGGGATTCGAGCTCACATGCATGGAGGAGTCGATCAAGAAGC AGTGAGGAAGATCTCTCTTTACACAGACGGAGGAAGGGTCGCCTAGGTCATGATTCGTGA TGCTGCTGAAATTTCTGATCATTTGGTCACTAGACTGTCGACTTCGGTTTCTGGACGATC AAATGTTGTATAGATGCCAGTAGCTTATGCAGCAGTCCTTGCCAGCCTTGCTTTCTTCTT CACTTTGCCGATAAGGTTCTTTTTCCGGATAGAGGTTTCTTGCAAAGCAGAAGGCTTGTA ATAGTTTTGCTAATTTAGAGTTGTTTACATCTCACCATTGGTTCCGCCCTGGAATTCCGA CTTTTTATGCCCATCACACTTGGTAGTAAGAGCATCTCCAACACATTTTCTGAAGTTACT CCCAATAATTCTGGGTATTGGTACGCTTGCAACTAGTCCCATCACCTAAGCTTAGCTCCC AATAATTTGTGTACATATACCTTGTTTTTTTATTCAAACCCTGCTGTTTCTAGTG