Transcript Data
Barley RTD
Links



Exon Structure of HORVU5Hr1G103280.27

ChromosomeExonStartStopDirection
chr5H1615393890615393882-
chr5H2615394192615394034-
chr5H3615394470615394336-
chr5H4615394733615394575-
chr5H5615395945615395625-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7None-----
TAIR PP10 AT1G10320 @ ARAPORT
AT1G10320.1 @ TAIR		 +1 1e-50 177 93/152 (61%) Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:3384164-3388373 REVERSE LENGTH=757
BRACH PP3 Bradi3g45900.1.p +1 2e-72 236 137/157 (87%) pacid=32822846 transcript=Bradi3g45900.1 locus=Bradi3g45900 ID=Bradi3g45900.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (783 bp)

>HORVU5Hr1G103280.27 783 150831_barley_pseudomolecules
ATGTCCACGGCGGCCGCTGATCTCCCGGCGGCGTCTACGAGGAGCGAGAGGCGGAAGGAG
CGGAAGAAGCAGCGCCGCCGGCGCGCGCGTAGGGAGGCGGCGGCGGCCGCGCGGGCTGCG
GCAGAGGCGCTCGCCGCCGACCCAGAGGAGGGGCGCCGCCTCCGAGAGCTCGAGGAGGCC
GAGGCCGACGCGTCCGACCGCGCCCGCCGCGCCTTTGAGGACGCCGAGCGCCGATGGCTC
GAGAAGGCCGCCTCGCGTGCCGCCGAGGAGGCGGCTGCGGAAGAAGAGGCGTGTGCCGCC
GAAGCTTCCACGCGCGATAAGTATAACGATGACCACCGAGACGAGACAGAAGAAGATGGG
GAGTGGGAGTATGTTGAAGATGGACCAGCAGAGATCATATGGCAAGGAAATGAGATCATT
GTGAAGAAGAAAAAGGTCAAAATACCAAAGAAGGCAGAGGCTAAACCACTAAGTCAAGAG
GAAGAGAGACCTACATCAAATCCGCTGCCACCTCAGTCTGTAGCTGTTGATTCTCAGAGG
AGAGAACCTTCCTTGTCTGCTCGAGAACTACTTGAGAAAGTTGCTCAAGAGACTCCAAAT
TTCGGAACTGAACAGGATAAGGCCCATTGCCCATTTTACCTCAAAACAGCAGCTTGCCGC
TTTGGAGTGCGCTGCAGCAGAGTTCACTTCTACCCTGACAAATCATGCACATTGCTCATG
AAAAACATGTATAATGGTCCGGGCCTTGTTTTGGAACAAGATGAAGGGCTTGAGGTTTGT
TAG