- Transcript HORVU5Hr1G103280.19
- Transcript IDHORVU5Hr1G103280.19
- Gene IDHORVU5Hr1G103280
Barley RTD
Exon Structure of HORVU5Hr1G103280.19
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 615390084 | 615388687 | - |
| chr5H | 2 | 615390389 | 615390163 | - |
| chr5H | 3 | 615390625 | 615390551 | - |
| chr5H | 4 | 615390934 | 615390818 | - |
| chr5H | 5 | 615392680 | 615392324 | - |
| chr5H | 6 | 615392901 | 615392820 | - |
| chr5H | 7 | 615394192 | 615394034 | - |
| chr5H | 8 | 615394470 | 615394336 | - |
| chr5H | 9 | 615394733 | 615394575 | - |
| chr5H | 10 | 615395679 | 615395625 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g35150.1 | +3 | 6e-110 | 332 | 180/242 (74%) | protein|splicing factor U2AF, putative, expressed |
| TAIR PP10 | AT1G10320 @ ARAPORT AT1G10320.1 @ TAIR |
+3 | 6e-68 | 241 | 110/144 (76%) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:3384164-3388373 REVERSE LENGTH=757 |
| BRACH PP3 | Bradi3g45900.1.p | +3 | 2e-160 | 397 | 198/243 (81%) | pacid=32822846 transcript=Bradi3g45900.1 locus=Bradi3g45900 ID=Bradi3g45900.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2764 bp)
>HORVU5Hr1G103280.19 2764 150831_barley_pseudomolecules GGAGGCGGCTGCGGAAGAAGAGGCGTGTGCCGCCGAAGCTTCCACGCGCGATAAGTATAA CGATGACCACCGAGACGAGACAGAAGAAGATGGGGAGTGGGAGTATGTTGAAGATGGACC AGCAGAGATCATATGGCAAGGAAATGAGATCATTGTGAAGAAGAAAAAGGTCAAAATACC AAAGAAGGCAGAGGCTAAACCACTAAGTCAAGAGGAAGAGAGACCTACATCAAATCCGCT GCCACCTCAGTCTGTAGCTGTTGATTCTCAGAGGAGAGAACCTTCCTTGTCTGCTCGAGA ACTACTTGAGAAAGTTGCTCAAGAGACTCCAAATTTCGGAACTGAACAGGATAAGGCCCA TTGCCCATTTTACCTCAAAACAGCAGCTTGCCGCTTTGGAGTGCGCTGCAGCAGAGTTCA CTTCTACCCTGACAAATCATGCACATTGCTCATGAAAAACATGTATAATGGTCCGGGCCT TGTTTTGGAACAAGATGAAGGGCTTGAGAATTCCCTCTCGAGGCAAGCAGTGACCAACCA CCTAGTTGGTCTCATTTGATTGGAGACGCCCTGAACTTTCATCTGCTACCTACTTGTGAG ATGTTCTTGTATTGGACGTGTTGATGATCATTAGGTGACAGGTGAATGTGTTTTAACCCC TTTAGTATAGAAAATACTTTTTGATGGTAAACTATTGCTTAAGTAGGCCCTTATTATTAC TTTTGTGTTTTCTAGTTTTAATTATCTGTTTCTCCCTTTGTGTTTCCTCTTGTGTTTACT TCATAGGTCATGGAAGTTGCAGTTGAATGGTTGATTTGATCCATAGCTAATAAGTTTTTT ATAACATCCTCCAGTTTACAGACGAAGAGATTGAACAGAGCTATGAAGAATTTTATGAAG ACGTGCACACAGAATTTCTGAAATTTGGTGAACTTGTCAACTTCAAGGTATGTAGAAATG GATCGTTCCATCTTCGAGGAAATGTCTATGTGCATTATAAAGCTTTGGATTCAGCTCTTC TTGCCTACAACAGCATGAATGGTCGATATTTTGCTGGGAAGCAGATAACATGCGAGTTTG TTGCTCTGACGAAATGGAAGTCTGCGATCTGTGGTGAGTACATGAGGTCAAGATTCAAGA CATGTTCACATGGAGTTGCTTGTAATTTCATTCATTGCTTTCGTAATCCTGGTGGAGATT ATGAGTGGGCTGATTGGGACAATCCTCCACCTAAATACTGGACTCGGAAGATGGCTGCTC TGTTTGGACCCTCAGATGATGCTGTTTTTGACAAGGCGAGTGATGCCCCAGATTTCGAAC GGTTACACAGTTCAGACAGGAAGAGACTGAGAAGTTCTGATGGCAGGTATATTTCAAGTA GACATAGGGATGGAGATGCACATAAACGGCACTCATCAAGAGTTTTTTCACATTCGAAGC AAGAACAGAGCAATTATATCATGAAATATGGGCATACTCGACATAGTAGAGAACCATCTA CAGCAAAAAAGCAACGAGGCCATGAGATTGAAGATGATATTGGCAGATACTGTTCGCCCG TGGAAAATGAAAGAGTGNNNNNNNNNNNNNNNNNNAAAGAGTGTCCCAAACACACAAGCG TGAAGAGAAACATAGAGATGGCCATGGCGATGGAGCACGTGGAGACAATGGTAAAATCAA GTCCAGGAAGCACAGATCTGAACAGCACGAAAGTCTGGAGTCTGGATGTTCTGATTGGCC TTCAGAATTTGCTGATGCAGGCACGAGCAGAAGTCCTTCATGCAGCAAGTCCACCAACAG GTACAGTAATCACAATAGGAGTCGGGGGCAATCCTTGGATGATTCCAATCTTGAAAGGGG CTACTCCACTGCGGACAAATCATCAGGGAAAGCGCACATTGCCAAAAGTAGCTCGAGACA TTACGTAGAAGATGACTCTTATGGTGAGAAAGGTAGTGGAAGAGACAAATCTGGAAAGCA CAGTGATCATTGTGATGACCCTGATGATAGATGGCTAGCAACAACTAGTGACGTTGATTC AGATGGAGAAACTCAATTCCTGAGATCAAGCAGTGGAATTGGTAAAGGTGGAAAGAATGA TAATGCTCCTCGAGACGAGGATGATCGTTGTCAAAGGTCCAGCAGTAGGTCTGCTAGGTC AAGAGCGAACGAGACGAAGAGCAGTAGGAAGAGGAAGAAGCATCACAGTGAAATCAGGAA GAATAGCGATAGTGATGACAGTCCGTCAGACTCTAGTGACATTAGGGATTCGAGCTCACA TGCATGGAGGAGTCGATCAAGAAGCAGTGAGGAAGATCTCTCTTTACACAGACGGAGGAA GGGTCGCCTAGGTCATGATTCGTGATGCTGCTGAAATTTCTGATCATTTGGTCACTAGAC TGTCGACTTCGGTTTCTGGACGATCAAATGTTGTATAGATGCCAGTAGCTTATGCAGCAG TCCTTGCCAGCCTTGCTTTCTTCTTCACTTTGCCGATAAGGTTCTTTTTCCGGATAGAGG TTTCTTGCAAAGCAGAAGGCTTGTAATAGTTTTGCTAATTTAGAGTTGTTTACATCTCAC CATTGGTTCCGCCCTGGAATTCCGACTTTTTATGCCCATCACACTTGGTAGTAAGAGCAT CTCCAACACATTTTCTGAAGTTACTCCCAATAATTCTGGGTATTGGTACGCTTGCAACTA GTCCCATCACCTAAGCTTAGCTCCCAATAATTTGTGTACATATACCTTGTTTTTTTATTC AAAC