- Transcript HORVU5Hr1G096780.6
- Transcript IDHORVU5Hr1G096780.6
- Gene IDHORVU5Hr1G096780
Barley RTD
Exon Structure of HORVU5Hr1G096780.6
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220744 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224401 | 602224150 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +1 | 0.0 | 568 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +1 | 0.0 | 1423 | 781/1008 (77%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3012 bp)
>HORVU5Hr1G096780.6 3012 150831_barley_pseudomolecules TGGTCTGTTCAACAGACTGTAACACTAATGGGAGCTAAAGTGGAAGCTGAGAGTTACAAT ACTGGATATTATGCCACAGGGGATCTGCACATGGACTCAAATGGTTGGCGCTCTCCATAC TATGAGGATAAGCCATCAAATGGGCAGTTGTACAATGGCTTCATGACAAAGCAGGCAGAT GGTTATTCAGAGTACGACAACGAAACGCTGAAGCGCACAATGCTTTCACATGAAGCTATG TTTAGACAGCAGGTTTATGAACTGCACCGTGTTTACAAAATACAGAGAGACCTGATGAAG CATTATGAAAGCAAAGACACATATGCATACCCAGTACTGGCAGATGCATCACAGACAAAT TCATCATCACAAGTTCCACCAAATGGCTCAAAGATGATATGGCAGATGCCTCTAGGGGCC AAAACATACGGAGAAGCTACTGTTGCAGTGCACACTGATACAAACCACTCCTTGAAGTTC CTTAGTGATGGCAGTGTTCTGCCCTCTCCAGATGGATTCCCCTCAAATGGTGTTGCTTTA AATACCAAGCAAGGCGTTATTGACCTTGAGCTTCCAGCTGATCATTATATAGATGATGAC AACACATCAGATGATAAGCCTATAGATTTCCTTGGAGTAGATTCGGGTACAAAACTGCCG AATGATGCCGGGGTCACATTCAGTGGCGCAGAAGGCTTGGGGAGGTTCAGTGATAATAGC TCAACCTCTGGTTTGCTGGCTACTAATAAACCGGGAGGCTGCCATGTCGCTGACCTGAAT GAGCCAATTACTGGGATGCATATGGGTGGAACAAACGGGTCAGTACCCAGAGGTCTTCCG TATACCTTGGAGAACTCTTGGCGCCAATCTGCAGTGAGATCAGGCACAGCTAACTTTGGT TTCAATAAAGAATACTCCAAAGAGAAGCATACCGATGAAGGAACGAGCTCAAATTTCCTC GATGCAAGTGCCAAACTAAGACAGGAGGAGAAACCATTGATTGATAAAGGAAAACAAGTC AGCAGTCAATCTTTTTTTACACCCAGATACAGCAATACTGATCTGCAAAAATCCTTCAAG GTTGCTGATGGGAGATCTGCAACCAATGAGTTTATTTACCATGGTCAAAATAGTTCAGTT GGATGGTTTTCAAAAGGTCCTATGGGAGCATCTGCCGTCAATAATTTTGCTAGACTTGAC CATCCACATCATTCAAGTATTGGTACACTTGTTGCTCCAATCTCCATTCCTCACATAGAC CATCCTTCCGTCGCCTCTCCTATAGGTTCTTGCACAGTGGACCCAAGGAGCAGTGTTATC AACAATGCTTTCCAGCGAGTTCCAAGTTTCAATGGATCCTCAACTGTTAATTCATACAAG AGTCCTGGTGCTGTGACCCAAAGCATTGGACCTTCGAGTCACAGCATTGGACCTTCGATT CATAAGCTTAAAAGATTCGATAATTTGGATGGTAGTTACTTTGGCTTTCCGCTTGATCCA TTTTCCGCATCACGATCCAGACAACAGGTTGCAATGTCAAGTGAGTTGGAGCAAAGGAAC TGCCTGATGTTTGAACATTCAGCTGCACGGCAGTCTCTTGGGTATACTCAGCCCACAAGC ACCAAGGGCACAAAGAACTTTAATCTGAATGAAGCACTGTCAGATGGTCCAGAAGAGCTT GTAGAACAGGATGGAAGATCTGTTGGCAGTTTGCAGCATAGTAAAGGTGAGGGATCAGTA TTTGGGATCTCTTGGCTAAAAAATAGAGCTACTTGTGCTGATCCAACAGGTTTGGAAAAG CAAAGGAAGGTGTTTGGCCATTCCAATGGGACTGCAACAGACACGAAAAACAACAACGAC TTGACGGGAACAACACCGATTGTTTGCAATTTGTCAGATTCCGCCTCGACGTCCCTAGGT TGCAGAATTAAGATAGATGATGCTTCTGATGTCATCACTGATAGAACTTGGCTGGTATGT AATAAGACTGAGGAGAGTACCACGAGACATTTACCACTTTCATGCCAGAAACCCTTTGAC AGAGATGAACAAACTGCTGAAGGTGTTGTCAAGAAAAGTGGCGCCGTCATCAGAAATTTA TTTGATCTGAATGATGACATACCACATGAAGATAACTCAGAGTCATCAGTAGTGTCACAT GAATGCGACGTGGCGTCGTTACAGAACAACCATGCTAAGCGCACATTTTTGATTGACTTG GAAGAAATGCCAGCTTGTGAAGATGGTGCTGCCTGGACTTCTCAACAGGAATGCACACCT TCTGGTACGCTTGATGCATGCAAGGAAGCTGATATGTGTTCTCCATCCGCTATGGATGCA GCGCAGATCATTCTTGCGTTGTCAACGGATGTGCTGACCACCACAGGCACACCCGATGAT ATGCTGCAGTGGTTTGCTGAGCTCGCGATATCAAGCACGGATGCCCATGCCGATGAGCAA GCAGAAGCCCAGGGTTGCATCAATAATTTCAGTGATGATGGTTTGGATTCATTTGAAGCC TTGACACTGAAGCTGGAAGAGTGCAATACTGATGAGCGTTGGACACCGGAACCACCACTG ACAGACGATGAACAAGCTGTTTCAGCGGTGAACCTGCTGTCCAAGCCAAAAAGAGGACCG CAAAGGAAGCGACGGCAGAAGCGAGACTTCCAGAAGGACATCTTACCTGGTCTCTCGTCA CTTTCCCGTCCTAAAATCATAGAGGACATTCAGCTAATTGAGGGGTTAGTACAGGCATCT GGTGGATCATGGGAGTCGAGTTTCACTAGGCGAGCGCGCTGTGGGCGAACAAGAGGTAGA AAGCCCCGCAAAAACCAGCCAGCTACCGTAGAGATAGAAGCTGAGGCCGAGGCCGAGGTG AGCCCGCCCTTGAAACCCGACTCCATTGGCTTAGAAGCTGATGAAAGGGGCATGGTTAGC TGGGGACGAACAACAAGACGGTGTCGCAAGCCGAGATGCCCCTCGGGCAGTAACATCGCG GCTTCGTCTTGA