- Transcript HORVU5Hr1G096780.5
- Transcript IDHORVU5Hr1G096780.5
- Gene IDHORVU5Hr1G096780
Barley RTD
Exon Structure of HORVU5Hr1G096780.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220417 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224386 | 602224150 | - |
| chr5H | 4 | 602224952 | 602224892 | - |
| chr5H | 5 | 602225112 | 602225078 | - |
| chr5H | 6 | 602226831 | 602226500 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +3 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +3 | 0.0 | 1424 | 784/1010 (78%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3752 bp)
>HORVU5Hr1G096780.5 3752 150831_barley_pseudomolecules GAAAGAGAGTAGAAGGTGGTTCCATTCCATCCCCTCTTCCCTTCCACCAGAGGAGAGAGA AAGAAAGAGAGAGAGAGGGAGGCCAGGCCAAACAACGCCAATCCAAAACCCCCAAAAGGA GCAAGGAAAGAGAAGAGAGAGTGGGGAGTGTGTGTGTGAGAGAGAGAACAAACCGAGATA CTCCCACATCCGAGAGCAGACAGTGGTTCCTTCCTTCGTTCGTTCGTTCGTTCCGGCAGG AGCAAGAACCCACCGCTTTCTCCCCCTCTTCTTCCTGGCCTGGCCCCAGCAAATCCGATT CCAACCTCCGCCCGGATACATCGGAGCTCCGGGTTATTTCTCTTGAAGTGCCATTCAGAT TGGGAGGTTCTAGTTGCCGTCCGGGTCAAGGCGAATTTTAGCATGATTGCTACATGCCCA TTGTTTTGACTGTAACACTAATGGGAGCTAAAGTGGAAGCTGAGAGTTACAATACTGGAT ATTATGCCACAGGGGATCTGCACATGGACTCAAATGGTTGGCGCTCTCCATACTATGAGG ATAAGCCATCAAATGGGCAGTTGTACAATGGCTTCATGACAAAGCAGGCAGATGGTTATT CAGAGTACGACAACGAAACGCTGAAGCGCACAATGCTTTCACATGAAGCTATGTTTAGAC AGCAGGTTTATGAACTGCACCGTGTTTACAAAATACAGAGAGACCTGATGAAGCATTATG AAAGCAAAGACACATATGCATACCCAGTACTGGCAGATGCATCACAGACAAATTCATCAT CACAAGTTCCACCAAATGGCTCAAAGATGATATGGCAGATGCCTCTAGGGGCCAAAACAT ACGGAGAAGCTACTGTTGCAGTGCACACTGATACAAACCACTCCTTGAAGTTCCTTAGTG ATGGCAGTGTTCTGCCCTCTCCAGATGGATTCCCCTCAAATGGTGTTGCTTTAAATACCA AGCAAGGCGTTATTGACCTTGAGCTTCCAGCTGATCATTATATAGATGATGACAACACAT CAGATGATAAGCCTATAGATTTCCTTGGAGTAGATTCGGGTACAAAACTGCCGAATGATG CCGGGGTCACATTCAGTGGCGCAGAAGGCTTGGGGAGGTTCAGTGATAATAGCTCAACCT CTGGTTTGCTGGCTACTAATAAACCGGGAGGCTGCCATGTCGCTGACCTGAATGAGCCAA TTACTGGGATGCATATGGGTGGAACAAACGGGTCAGTACCCAGAGGTCTTCCGTATACCT TGGAGAACTCTTGGCGCCAATCTGCAGTGAGATCAGGCACAGCTAACTTTGGTTTCAATA AAGAATACTCCAAAGAGAAGCATACCGATGAAGGAACGAGCTCAAATTTCCTCGATGCAA GTGCCAAACTAAGACAGGAGGAGAAACCATTGATTGATAAAGGAAAACAAGTCAGCAGTC AATCTTTTTTTACACCCAGATACAGCAATACTGATCTGCAAAAATCCTTCAAGGTTGCTG ATGGGAGATCTGCAACCAATGAGTTTATTTACCATGGTCAAAATAGTTCAGTTGGATGGT TTTCAAAAGGTCCTATGGGAGCATCTGCCGTCAATAATTTTGCTAGACTTGACCATCCAC ATCATTCAAGTATTGGTACACTTGTTGCTCCAATCTCCATTCCTCACATAGACCATCCTT CCGTCGCCTCTCCTATAGGTTCTTGCACAGTGGACCCAAGGAGCAGTGTTATCAACAATG CTTTCCAGCGAGTTCCAAGTTTCAATGGATCCTCAACTGTTAATTCATACAAGAGTCCTG GTGCTGTGACCCAAAGCATTGGACCTTCGAGTCACAGCATTGGACCTTCGATTCATAAGC TTAAAAGATTCGATAATTTGGATGGTAGTTACTTTGGCTTTCCGCTTGATCCATTTTCCG CATCACGATCCAGACAACAGGTTGCAATGTCAAGTGAGTTGGAGCAAAGGAACTGCCTGA TGTTTGAACATTCAGCTGCACGGCAGTCTCTTGGGTATACTCAGCCCACAAGCACCAAGG GCACAAAGAACTTTAATCTGAATGAAGCACTGTCAGATGGTCCAGAAGAGCTTGTAGAAC AGGATGGAAGATCTGTTGGCAGTTTGCAGCATAGTAAAGGTGAGGGATCAGTATTTGGGA TCTCTTGGCTAAAAAATAGAGCTACTTGTGCTGATCCAACAGGTTTGGAAAAGCAAAGGA AGGTGTTTGGCCATTCCAATGGGACTGCAACAGACACGAAAAACAACAACGACTTGACGG GAACAACACCGATTGTTTGCAATTTGTCAGATTCCGCCTCGACGTCCCTAGGTTGCAGAA TTAAGATAGATGATGCTTCTGATGTCATCACTGATAGAACTTGGCTGGTATGTAATAAGA CTGAGGAGAGTACCACGAGACATTTACCACTTTCATGCCAGAAACCCTTTGACAGAGATG AACAAACTGCTGAAGGTGTTGTCAAGAAAAGTGGCGCCGTCATCAGAAATTTATTTGATC TGAATGATGACATACCACATGAAGATAACTCAGAGTCATCAGTAGTGTCACATGAATGCG ACGTGGCGTCGTTACAGAACAACCATGCTAAGCGCACATTTTTGATTGACTTGGAAGAAA TGCCAGCTTGTGAAGATGGTGCTGCCTGGACTTCTCAACAGGAATGCACACCTTCTGGTA CGCTTGATGCATGCAAGGAAGCTGATATGTGTTCTCCATCCGCTATGGATGCAGCGCAGA TCATTCTTGCGTTGTCAACGGATGTGCTGACCACCACAGGCACACCCGATGATATGCTGC AGTGGTTTGCTGAGCTCGCGATATCAAGCACGGATGCCCATGCCGATGAGCAAGCAGAAG CCCAGGGTTGCATCAATAATTTCAGTGATGATGGTTTGGATTCATTTGAAGCCTTGACAC TGAAGCTGGAAGAGTGCAATACTGATGAGCGTTGGACACCGGAACCACCACTGACAGACG ATGAACAAGCTGTTTCAGCGGTGAACCTGCTGTCCAAGCCAAAAAGAGGACCGCAAAGGA AGCGACGGCAGAAGCGAGACTTCCAGAAGGACATCTTACCTGGTCTCTCGTCACTTTCCC GTCCTAAAATCATAGAGGACATTCAGCTAATTGAGGGGTTAGTACAGGCATCTGGTGGAT CATGGGAGTCGAGTTTCACTAGGCGAGCGCGCTGTGGGCGAACAAGAGGTAGAAAGCCCC GCAAAAACCAGCCAGCTACCGTAGAGATAGAAGCTGAGGCCGAGGCCGAGGTGAGCCCGC CCTTGAAACCCGACTCCATTGGCTTAGAAGCTGATGAAAGGGGCATGGTTAGCTGGGGAC GAACAACAAGACGGTGTCGCAAGCCGAGATGCCCCTCGGGCAGTAACATCGCGGCTTCGT CTTGAGCGACTGATCTTGGTCAGAGAGAACGTCGGTCACGATCATGTACTTGGGTTCGGG TTCCAGATTTGCCATCGAGATTGCGGTGGACTGGTATAAAGGTAAAAAATCACAGCCATG AGTGTGCATACTCTGCTGGCCTGTTTGGCCGGCCTCCCCCCTGCAGAGATTTCATGCCTT TTCGGGTCGAAACATGGTGTACATTTTTTTCTATAATAAATTCTTAAACTAGTCTATATG TGACAATTTCTGTAACAGCGTTGTATTAAGCTGGGCTCCAGGGCCTGAGGGGCCTGCTGT AATTCTTGAGATAGTGGCGAGGTACCTTGACT