- Transcript HORVU5Hr1G096780.4
- Transcript IDHORVU5Hr1G096780.4
- Gene IDHORVU5Hr1G096780
Barley RTD
Exon Structure of HORVU5Hr1G096780.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220337 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224386 | 602224150 | - |
| chr5H | 4 | 602225112 | 602224892 | - |
| chr5H | 5 | 602227511 | 602226266 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +1 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +1 | 0.0 | 1424 | 784/1010 (78%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4871 bp)
>HORVU5Hr1G096780.4 4871 150831_barley_pseudomolecules GACAAGCGCGTTGATGCATTTGGTTTTTGTTGCCATGTAAAGGTCCGGACGGCGTGTACG TAGCAGCGCAGATGCAAAGCCCAGGAGGGAGATAAAAAAAGGCATGCATCACGAGGGGAG GGATAAAAAGATGGCCGGTTTTGCAAGGTTTGGAAAGCAGGTTTGGTGGTACTGTCCTCG AGTATTTTAACAGTTGCCGTTTCTCCCTCTCCCCCCCCACCGCACCAAGGGTGGACAGAT TCTCTCCCATGTCCCAATCCCTAAACTCCCCCATTATATTACTCTAGAAACACACCAAAC CGAGGAAAGAAATCAATCATCCTCGTGATAACTGTCTCGTAGGAAATCCGATCCTCCAGA ATAATTGTATCATATCAGCACACTTGGGATCGGAAAGGAAGGAAAATGGAATGAACTAGG AGGACTGGTTCCACACCGGAATTGTGAGAGGGACAGCAGACGGTGGCGATGTGGTGGCAG GGCAGGGCAGGGCAGGGGAGGGGAGATAATAGTATTATAATATTGGGAAATGTCTGAGTT GAGTTGGTGATTGATGAGAGAGAAAGACGGAGGGAGAGGGACAAGGGGTGGGGTGATGGG GAGGATCAGCATCAGGGGGGCGGAGAGAGAGAGAGAGAATATCAGATGTCAACAAATCTG CTGTCCTTGCGGCTCGTTTAGAAAGAGAGTAGAAGGTGGTTCCATTCCATCCCCTCTTCC CTTCCACCAGAGGAGAGAGAAAGAAAGAGAGAGAGAGGGAGGCCAGGCCAAACAACGCCA ATCCAAAACCCCCAAAAGGAGCAAGGAAAGAGAAGAGAGAGTGGGGAGTGTGTGTGTGAG AGAGAGAACAAACCGAGATACTCCCACATCCGAGAGCAGACAGTGGTTCCTTCCTTCGTT CGTTCGTTCGTTCCGGCAGGAGCAAGAACCCACCGCTTTCTCCCCCTCTTCTTCCTGGCC TGGCCCCAGCAAATCCGATTCCAACCTCCGCCCGGATACATCGGAGCTCCGGGTATCCTC CGCCCCGATCGCCCCCCTGCCGCCGCGAGAAAGATTTGTTTTTTGTTTTGTTCTACGAGT ACTAGGATAGTATAGATACATAAATATCCTGTCTTGGTTGGGTGGTGCGGGGTTTCTCGG GGCATGGCCGCGGCGGCGGTGCCGGACAGGATGCTCGCTCGCCGAATGCTGCGGGTCGTC AGGCTCAACCCGCTGCAGCGCACTGCCAACAATCCTTCTCCCTGAGGTTATTTCTCTTGA AGTGCCATTCAGATTGGGAGGTAGTATTGATTCAGCTGAGCAAGTCGAGCTGTCTAGTTA GCTCAAAGCATTGAAGATTGGAATTTTACACGTGCATTGCATTAACACTGTGATTTCCCT TTGGTGCCCTGTGATGTGATGATCAGTTCTAGTTGCCGTCCGGGTCAAGGCGAATTTTAG CATGATTGCTACATGCCCATTGTTTTGACTGTAACACTAATGGGAGCTAAAGTGGAAGCT GAGAGTTACAATACTGGATATTATGCCACAGGGGATCTGCACATGGACTCAAATGGTTGG CGCTCTCCATACTATGAGGATAAGCCATCAAATGGGCAGTTGTACAATGGCTTCATGACA AAGCAGGCAGATGGTTATTCAGAGTACGACAACGAAACGCTGAAGCGCACAATGCTTTCA CATGAAGCTATGTTTAGACAGCAGGTTTATGAACTGCACCGTGTTTACAAAATACAGAGA GACCTGATGAAGCATTATGAAAGCAAAGACACATATGCATACCCAGTACTGGCAGATGCA TCACAGACAAATTCATCATCACAAGTTCCACCAAATGGCTCAAAGATGATATGGCAGATG CCTCTAGGGGCCAAAACATACGGAGAAGCTACTGTTGCAGTGCACACTGATACAAACCAC TCCTTGAAGTTCCTTAGTGATGGCAGTGTTCTGCCCTCTCCAGATGGATTCCCCTCAAAT GGTGTTGCTTTAAATACCAAGCAAGGCGTTATTGACCTTGAGCTTCCAGCTGATCATTAT ATAGATGATGACAACACATCAGATGATAAGCCTATAGATTTCCTTGGAGTAGATTCGGGT ACAAAACTGCCGAATGATGCCGGGGTCACATTCAGTGGCGCAGAAGGCTTGGGGAGGTTC AGTGATAATAGCTCAACCTCTGGTTTGCTGGCTACTAATAAACCGGGAGGCTGCCATGTC GCTGACCTGAATGAGCCAATTACTGGGATGCATATGGGTGGAACAAACGGGTCAGTACCC AGAGGTCTTCCGTATACCTTGGAGAACTCTTGGCGCCAATCTGCAGTGAGATCAGGCACA GCTAACTTTGGTTTCAATAAAGAATACTCCAAAGAGAAGCATACCGATGAAGGAACGAGC TCAAATTTCCTCGATGCAAGTGCCAAACTAAGACAGGAGGAGAAACCATTGATTGATAAA GGAAAACAAGTCAGCAGTCAATCTTTTTTTACACCCAGATACAGCAATACTGATCTGCAA AAATCCTTCAAGGTTGCTGATGGGAGATCTGCAACCAATGAGTTTATTTACCATGGTCAA AATAGTTCAGTTGGATGGTTTTCAAAAGGTCCTATGGGAGCATCTGCCGTCAATAATTTT GCTAGACTTGACCATCCACATCATTCAAGTATTGGTACACTTGTTGCTCCAATCTCCATT CCTCACATAGACCATCCTTCCGTCGCCTCTCCTATAGGTTCTTGCACAGTGGACCCAAGG AGCAGTGTTATCAACAATGCTTTCCAGCGAGTTCCAAGTTTCAATGGATCCTCAACTGTT AATTCATACAAGAGTCCTGGTGCTGTGACCCAAAGCATTGGACCTTCGAGTCACAGCATT GGACCTTCGATTCATAAGCTTAAAAGATTCGATAATTTGGATGGTAGTTACTTTGGCTTT CCGCTTGATCCATTTTCCGCATCACGATCCAGACAACAGGTTGCAATGTCAAGTGAGTTG GAGCAAAGGAACTGCCTGATGTTTGAACATTCAGCTGCACGGCAGTCTCTTGGGTATACT CAGCCCACAAGCACCAAGGGCACAAAGAACTTTAATCTGAATGAAGCACTGTCAGATGGT CCAGAAGAGCTTGTAGAACAGGATGGAAGATCTGTTGGCAGTTTGCAGCATAGTAAAGGT GAGGGATCAGTATTTGGGATCTCTTGGCTAAAAAATAGAGCTACTTGTGCTGATCCAACA GGTTTGGAAAAGCAAAGGAAGGTGTTTGGCCATTCCAATGGGACTGCAACAGACACGAAA AACAACAACGACTTGACGGGAACAACACCGATTGTTTGCAATTTGTCAGATTCCGCCTCG ACGTCCCTAGGTTGCAGAATTAAGATAGATGATGCTTCTGATGTCATCACTGATAGAACT TGGCTGGTATGTAATAAGACTGAGGAGAGTACCACGAGACATTTACCACTTTCATGCCAG AAACCCTTTGACAGAGATGAACAAACTGCTGAAGGTGTTGTCAAGAAAAGTGGCGCCGTC ATCAGAAATTTATTTGATCTGAATGATGACATACCACATGAAGATAACTCAGAGTCATCA GTAGTGTCACATGAATGCGACGTGGCGTCGTTACAGAACAACCATGCTAAGCGCACATTT TTGATTGACTTGGAAGAAATGCCAGCTTGTGAAGATGGTGCTGCCTGGACTTCTCAACAG GAATGCACACCTTCTGGTACGCTTGATGCATGCAAGGAAGCTGATATGTGTTCTCCATCC GCTATGGATGCAGCGCAGATCATTCTTGCGTTGTCAACGGATGTGCTGACCACCACAGGC ACACCCGATGATATGCTGCAGTGGTTTGCTGAGCTCGCGATATCAAGCACGGATGCCCAT GCCGATGAGCAAGCAGAAGCCCAGGGTTGCATCAATAATTTCAGTGATGATGGTTTGGAT TCATTTGAAGCCTTGACACTGAAGCTGGAAGAGTGCAATACTGATGAGCGTTGGACACCG GAACCACCACTGACAGACGATGAACAAGCTGTTTCAGCGGTGAACCTGCTGTCCAAGCCA AAAAGAGGACCGCAAAGGAAGCGACGGCAGAAGCGAGACTTCCAGAAGGACATCTTACCT GGTCTCTCGTCACTTTCCCGTCCTAAAATCATAGAGGACATTCAGCTAATTGAGGGGTTA GTACAGGCATCTGGTGGATCATGGGAGTCGAGTTTCACTAGGCGAGCGCGCTGTGGGCGA ACAAGAGGTAGAAAGCCCCGCAAAAACCAGCCAGCTACCGTAGAGATAGAAGCTGAGGCC GAGGCCGAGGTGAGCCCGCCCTTGAAACCCGACTCCATTGGCTTAGAAGCTGATGAAAGG GGCATGGTTAGCTGGGGACGAACAACAAGACGGTGTCGCAAGCCGAGATGCCCCTCGGGC AGTAACATCGCGGCTTCGTCTTGAGCGACTGATCTTGGTCAGAGAGAACGTCGGTCACGA TCATGTACTTGGGTTCGGGTTCCAGATTTGCCATCGAGATTGCGGTGGACTGGTATAAAG GTAAAAAATCACAGCCATGAGTGTGCATACTCTGCTGGCCTGTTTGGCCGGCCTCCCCCC TGCAGAGATTTCATGCCTTTTCGGGTCGAAACATGGTGTACATTTTTTTCTATAATAAAT TCTTAAACTAGTCTATATGTGACAATTTCTGTAACAGCGTTGTATTAAGCTGGGCTCCAG GGCCTGAGGGGCCTGCTGTAATTCTTGAGATAGTGGCGAGGTACCTTGACTGTCCGGTAT TCAGAAATCAAAAAGGCTAATCGGTGTAGTTCTATATAGTTCTTTTAAATCTTGTTTTGT TTTGTGTTGTG