- Transcript HORVU5Hr1G096780.3
- Transcript IDHORVU5Hr1G096780.3
- Gene IDHORVU5Hr1G096780
Barley RTD
Exon Structure of HORVU5Hr1G096780.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220337 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224322 | 602224150 | - |
| chr5H | 4 | 602225112 | 602224892 | - |
| chr5H | 5 | 602227511 | 602226266 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +3 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +3 | 0.0 | 1388 | 765/987 (78%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4807 bp)
>HORVU5Hr1G096780.3 4807 150831_barley_pseudomolecules GACAAGCGCGTTGATGCATTTGGTTTTTGTTGCCATGTAAAGGTCCGGACGGCGTGTACG TAGCAGCGCAGATGCAAAGCCCAGGAGGGAGATAAAAAAAGGCATGCATCACGAGGGGAG GGATAAAAAGATGGCCGGTTTTGCAAGGTTTGGAAAGCAGGTTTGGTGGTACTGTCCTCG AGTATTTTAACAGTTGCCGTTTCTCCCTCTCCCCCCCCACCGCACCAAGGGTGGACAGAT TCTCTCCCATGTCCCAATCCCTAAACTCCCCCATTATATTACTCTAGAAACACACCAAAC CGAGGAAAGAAATCAATCATCCTCGTGATAACTGTCTCGTAGGAAATCCGATCCTCCAGA ATAATTGTATCATATCAGCACACTTGGGATCGGAAAGGAAGGAAAATGGAATGAACTAGG AGGACTGGTTCCACACCGGAATTGTGAGAGGGACAGCAGACGGTGGCGATGTGGTGGCAG GGCAGGGCAGGGCAGGGGAGGGGAGATAATAGTATTATAATATTGGGAAATGTCTGAGTT GAGTTGGTGATTGATGAGAGAGAAAGACGGAGGGAGAGGGACAAGGGGTGGGGTGATGGG GAGGATCAGCATCAGGGGGGCGGAGAGAGAGAGAGAGAATATCAGATGTCAACAAATCTG CTGTCCTTGCGGCTCGTTTAGAAAGAGAGTAGAAGGTGGTTCCATTCCATCCCCTCTTCC CTTCCACCAGAGGAGAGAGAAAGAAAGAGAGAGAGAGGGAGGCCAGGCCAAACAACGCCA ATCCAAAACCCCCAAAAGGAGCAAGGAAAGAGAAGAGAGAGTGGGGAGTGTGTGTGTGAG AGAGAGAACAAACCGAGATACTCCCACATCCGAGAGCAGACAGTGGTTCCTTCCTTCGTT CGTTCGTTCGTTCCGGCAGGAGCAAGAACCCACCGCTTTCTCCCCCTCTTCTTCCTGGCC TGGCCCCAGCAAATCCGATTCCAACCTCCGCCCGGATACATCGGAGCTCCGGGTATCCTC CGCCCCGATCGCCCCCCTGCCGCCGCGAGAAAGATTTGTTTTTTGTTTTGTTCTACGAGT ACTAGGATAGTATAGATACATAAATATCCTGTCTTGGTTGGGTGGTGCGGGGTTTCTCGG GGCATGGCCGCGGCGGCGGTGCCGGACAGGATGCTCGCTCGCCGAATGCTGCGGGTCGTC AGGCTCAACCCGCTGCAGCGCACTGCCAACAATCCTTCTCCCTGAGGTTATTTCTCTTGA AGTGCCATTCAGATTGGGAGGTAGTATTGATTCAGCTGAGCAAGTCGAGCTGTCTAGTTA GCTCAAAGCATTGAAGATTGGAATTTTACACGTGCATTGCATTAACACTGTGATTTCCCT TTGGTGCCCTGTGATGTGATGATCAGTTCTAGTTGCCGTCCGGGTCAAGGCGAATTTTAG CATGATTGCTACATGCCCATTGTTTTGGGGATCTGCACATGGACTCAAATGGTTGGCGCT CTCCATACTATGAGGATAAGCCATCAAATGGGCAGTTGTACAATGGCTTCATGACAAAGC AGGCAGATGGTTATTCAGAGTACGACAACGAAACGCTGAAGCGCACAATGCTTTCACATG AAGCTATGTTTAGACAGCAGGTTTATGAACTGCACCGTGTTTACAAAATACAGAGAGACC TGATGAAGCATTATGAAAGCAAAGACACATATGCATACCCAGTACTGGCAGATGCATCAC AGACAAATTCATCATCACAAGTTCCACCAAATGGCTCAAAGATGATATGGCAGATGCCTC TAGGGGCCAAAACATACGGAGAAGCTACTGTTGCAGTGCACACTGATACAAACCACTCCT TGAAGTTCCTTAGTGATGGCAGTGTTCTGCCCTCTCCAGATGGATTCCCCTCAAATGGTG TTGCTTTAAATACCAAGCAAGGCGTTATTGACCTTGAGCTTCCAGCTGATCATTATATAG ATGATGACAACACATCAGATGATAAGCCTATAGATTTCCTTGGAGTAGATTCGGGTACAA AACTGCCGAATGATGCCGGGGTCACATTCAGTGGCGCAGAAGGCTTGGGGAGGTTCAGTG ATAATAGCTCAACCTCTGGTTTGCTGGCTACTAATAAACCGGGAGGCTGCCATGTCGCTG ACCTGAATGAGCCAATTACTGGGATGCATATGGGTGGAACAAACGGGTCAGTACCCAGAG GTCTTCCGTATACCTTGGAGAACTCTTGGCGCCAATCTGCAGTGAGATCAGGCACAGCTA ACTTTGGTTTCAATAAAGAATACTCCAAAGAGAAGCATACCGATGAAGGAACGAGCTCAA ATTTCCTCGATGCAAGTGCCAAACTAAGACAGGAGGAGAAACCATTGATTGATAAAGGAA AACAAGTCAGCAGTCAATCTTTTTTTACACCCAGATACAGCAATACTGATCTGCAAAAAT CCTTCAAGGTTGCTGATGGGAGATCTGCAACCAATGAGTTTATTTACCATGGTCAAAATA GTTCAGTTGGATGGTTTTCAAAAGGTCCTATGGGAGCATCTGCCGTCAATAATTTTGCTA GACTTGACCATCCACATCATTCAAGTATTGGTACACTTGTTGCTCCAATCTCCATTCCTC ACATAGACCATCCTTCCGTCGCCTCTCCTATAGGTTCTTGCACAGTGGACCCAAGGAGCA GTGTTATCAACAATGCTTTCCAGCGAGTTCCAAGTTTCAATGGATCCTCAACTGTTAATT CATACAAGAGTCCTGGTGCTGTGACCCAAAGCATTGGACCTTCGAGTCACAGCATTGGAC CTTCGATTCATAAGCTTAAAAGATTCGATAATTTGGATGGTAGTTACTTTGGCTTTCCGC TTGATCCATTTTCCGCATCACGATCCAGACAACAGGTTGCAATGTCAAGTGAGTTGGAGC AAAGGAACTGCCTGATGTTTGAACATTCAGCTGCACGGCAGTCTCTTGGGTATACTCAGC CCACAAGCACCAAGGGCACAAAGAACTTTAATCTGAATGAAGCACTGTCAGATGGTCCAG AAGAGCTTGTAGAACAGGATGGAAGATCTGTTGGCAGTTTGCAGCATAGTAAAGGTGAGG GATCAGTATTTGGGATCTCTTGGCTAAAAAATAGAGCTACTTGTGCTGATCCAACAGGTT TGGAAAAGCAAAGGAAGGTGTTTGGCCATTCCAATGGGACTGCAACAGACACGAAAAACA ACAACGACTTGACGGGAACAACACCGATTGTTTGCAATTTGTCAGATTCCGCCTCGACGT CCCTAGGTTGCAGAATTAAGATAGATGATGCTTCTGATGTCATCACTGATAGAACTTGGC TGGTATGTAATAAGACTGAGGAGAGTACCACGAGACATTTACCACTTTCATGCCAGAAAC CCTTTGACAGAGATGAACAAACTGCTGAAGGTGTTGTCAAGAAAAGTGGCGCCGTCATCA GAAATTTATTTGATCTGAATGATGACATACCACATGAAGATAACTCAGAGTCATCAGTAG TGTCACATGAATGCGACGTGGCGTCGTTACAGAACAACCATGCTAAGCGCACATTTTTGA TTGACTTGGAAGAAATGCCAGCTTGTGAAGATGGTGCTGCCTGGACTTCTCAACAGGAAT GCACACCTTCTGGTACGCTTGATGCATGCAAGGAAGCTGATATGTGTTCTCCATCCGCTA TGGATGCAGCGCAGATCATTCTTGCGTTGTCAACGGATGTGCTGACCACCACAGGCACAC CCGATGATATGCTGCAGTGGTTTGCTGAGCTCGCGATATCAAGCACGGATGCCCATGCCG ATGAGCAAGCAGAAGCCCAGGGTTGCATCAATAATTTCAGTGATGATGGTTTGGATTCAT TTGAAGCCTTGACACTGAAGCTGGAAGAGTGCAATACTGATGAGCGTTGGACACCGGAAC CACCACTGACAGACGATGAACAAGCTGTTTCAGCGGTGAACCTGCTGTCCAAGCCAAAAA GAGGACCGCAAAGGAAGCGACGGCAGAAGCGAGACTTCCAGAAGGACATCTTACCTGGTC TCTCGTCACTTTCCCGTCCTAAAATCATAGAGGACATTCAGCTAATTGAGGGGTTAGTAC AGGCATCTGGTGGATCATGGGAGTCGAGTTTCACTAGGCGAGCGCGCTGTGGGCGAACAA GAGGTAGAAAGCCCCGCAAAAACCAGCCAGCTACCGTAGAGATAGAAGCTGAGGCCGAGG CCGAGGTGAGCCCGCCCTTGAAACCCGACTCCATTGGCTTAGAAGCTGATGAAAGGGGCA TGGTTAGCTGGGGACGAACAACAAGACGGTGTCGCAAGCCGAGATGCCCCTCGGGCAGTA ACATCGCGGCTTCGTCTTGAGCGACTGATCTTGGTCAGAGAGAACGTCGGTCACGATCAT GTACTTGGGTTCGGGTTCCAGATTTGCCATCGAGATTGCGGTGGACTGGTATAAAGGTAA AAAATCACAGCCATGAGTGTGCATACTCTGCTGGCCTGTTTGGCCGGCCTCCCCCCTGCA GAGATTTCATGCCTTTTCGGGTCGAAACATGGTGTACATTTTTTTCTATAATAAATTCTT AAACTAGTCTATATGTGACAATTTCTGTAACAGCGTTGTATTAAGCTGGGCTCCAGGGCC TGAGGGGCCTGCTGTAATTCTTGAGATAGTGGCGAGGTACCTTGACTGTCCGGTATTCAG AAATCAAAAAGGCTAATCGGTGTAGTTCTATATAGTTCTTTTAAATCTTGTTTTGTTTTG TGTTGTG