- Transcript HORVU5Hr1G096780.2
- Transcript IDHORVU5Hr1G096780.2
- Gene IDHORVU5Hr1G096780
Barley RTD
Exon Structure of HORVU5Hr1G096780.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220337 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224322 | 602224150 | - |
| chr5H | 4 | 602225112 | 602224892 | - |
| chr5H | 5 | 602226839 | 602226500 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +3 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +3 | 0.0 | 1388 | 765/987 (78%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3901 bp)
>HORVU5Hr1G096780.2 3901 150831_barley_pseudomolecules CTCGTTTAGAAAGAGAGTAGAAGGTGGTTCCATTCCATCCCCTCTTCCCTTCCACCAGAG GAGAGAGAAAGAAAGAGAGAGAGAGGGAGGCCAGGCCAAACAACGCCAATCCAAAACCCC CAAAAGGAGCAAGGAAAGAGAAGAGAGAGTGGGGAGTGTGTGTGTGAGAGAGAGAACAAA CCGAGATACTCCCACATCCGAGAGCAGACAGTGGTTCCTTCCTTCGTTCGTTCGTTCGTT CCGGCAGGAGCAAGAACCCACCGCTTTCTCCCCCTCTTCTTCCTGGCCTGGCCCCAGCAA ATCCGATTCCAACCTCCGCCCGGATACATCGGAGCTCCGGGTTATTTCTCTTGAAGTGCC ATTCAGATTGGGAGGTAGTATTGATTCAGCTGAGCAAGTCGAGCTGTCTAGTTAGCTCAA AGCATTGAAGATTGGAATTTTACACGTGCATTGCATTAACACTGTGATTTCCCTTTGGTG CCCTGTGATGTGATGATCAGTTCTAGTTGCCGTCCGGGTCAAGGCGAATTTTAGCATGAT TGCTACATGCCCATTGTTTTGGGGATCTGCACATGGACTCAAATGGTTGGCGCTCTCCAT ACTATGAGGATAAGCCATCAAATGGGCAGTTGTACAATGGCTTCATGACAAAGCAGGCAG ATGGTTATTCAGAGTACGACAACGAAACGCTGAAGCGCACAATGCTTTCACATGAAGCTA TGTTTAGACAGCAGGTTTATGAACTGCACCGTGTTTACAAAATACAGAGAGACCTGATGA AGCATTATGAAAGCAAAGACACATATGCATACCCAGTACTGGCAGATGCATCACAGACAA ATTCATCATCACAAGTTCCACCAAATGGCTCAAAGATGATATGGCAGATGCCTCTAGGGG CCAAAACATACGGAGAAGCTACTGTTGCAGTGCACACTGATACAAACCACTCCTTGAAGT TCCTTAGTGATGGCAGTGTTCTGCCCTCTCCAGATGGATTCCCCTCAAATGGTGTTGCTT TAAATACCAAGCAAGGCGTTATTGACCTTGAGCTTCCAGCTGATCATTATATAGATGATG ACAACACATCAGATGATAAGCCTATAGATTTCCTTGGAGTAGATTCGGGTACAAAACTGC CGAATGATGCCGGGGTCACATTCAGTGGCGCAGAAGGCTTGGGGAGGTTCAGTGATAATA GCTCAACCTCTGGTTTGCTGGCTACTAATAAACCGGGAGGCTGCCATGTCGCTGACCTGA ATGAGCCAATTACTGGGATGCATATGGGTGGAACAAACGGGTCAGTACCCAGAGGTCTTC CGTATACCTTGGAGAACTCTTGGCGCCAATCTGCAGTGAGATCAGGCACAGCTAACTTTG GTTTCAATAAAGAATACTCCAAAGAGAAGCATACCGATGAAGGAACGAGCTCAAATTTCC TCGATGCAAGTGCCAAACTAAGACAGGAGGAGAAACCATTGATTGATAAAGGAAAACAAG TCAGCAGTCAATCTTTTTTTACACCCAGATACAGCAATACTGATCTGCAAAAATCCTTCA AGGTTGCTGATGGGAGATCTGCAACCAATGAGTTTATTTACCATGGTCAAAATAGTTCAG TTGGATGGTTTTCAAAAGGTCCTATGGGAGCATCTGCCGTCAATAATTTTGCTAGACTTG ACCATCCACATCATTCAAGTATTGGTACACTTGTTGCTCCAATCTCCATTCCTCACATAG ACCATCCTTCCGTCGCCTCTCCTATAGGTTCTTGCACAGTGGACCCAAGGAGCAGTGTTA TCAACAATGCTTTCCAGCGAGTTCCAAGTTTCAATGGATCCTCAACTGTTAATTCATACA AGAGTCCTGGTGCTGTGACCCAAAGCATTGGACCTTCGAGTCACAGCATTGGACCTTCGA TTCATAAGCTTAAAAGATTCGATAATTTGGATGGTAGTTACTTTGGCTTTCCGCTTGATC CATTTTCCGCATCACGATCCAGACAACAGGTTGCAATGTCAAGTGAGTTGGAGCAAAGGA ACTGCCTGATGTTTGAACATTCAGCTGCACGGCAGTCTCTTGGGTATACTCAGCCCACAA GCACCAAGGGCACAAAGAACTTTAATCTGAATGAAGCACTGTCAGATGGTCCAGAAGAGC TTGTAGAACAGGATGGAAGATCTGTTGGCAGTTTGCAGCATAGTAAAGGTGAGGGATCAG TATTTGGGATCTCTTGGCTAAAAAATAGAGCTACTTGTGCTGATCCAACAGGTTTGGAAA AGCAAAGGAAGGTGTTTGGCCATTCCAATGGGACTGCAACAGACACGAAAAACAACAACG ACTTGACGGGAACAACACCGATTGTTTGCAATTTGTCAGATTCCGCCTCGACGTCCCTAG GTTGCAGAATTAAGATAGATGATGCTTCTGATGTCATCACTGATAGAACTTGGCTGGTAT GTAATAAGACTGAGGAGAGTACCACGAGACATTTACCACTTTCATGCCAGAAACCCTTTG ACAGAGATGAACAAACTGCTGAAGGTGTTGTCAAGAAAAGTGGCGCCGTCATCAGAAATT TATTTGATCTGAATGATGACATACCACATGAAGATAACTCAGAGTCATCAGTAGTGTCAC ATGAATGCGACGTGGCGTCGTTACAGAACAACCATGCTAAGCGCACATTTTTGATTGACT TGGAAGAAATGCCAGCTTGTGAAGATGGTGCTGCCTGGACTTCTCAACAGGAATGCACAC CTTCTGGTACGCTTGATGCATGCAAGGAAGCTGATATGTGTTCTCCATCCGCTATGGATG CAGCGCAGATCATTCTTGCGTTGTCAACGGATGTGCTGACCACCACAGGCACACCCGATG ATATGCTGCAGTGGTTTGCTGAGCTCGCGATATCAAGCACGGATGCCCATGCCGATGAGC AAGCAGAAGCCCAGGGTTGCATCAATAATTTCAGTGATGATGGTTTGGATTCATTTGAAG CCTTGACACTGAAGCTGGAAGAGTGCAATACTGATGAGCGTTGGACACCGGAACCACCAC TGACAGACGATGAACAAGCTGTTTCAGCGGTGAACCTGCTGTCCAAGCCAAAAAGAGGAC CGCAAAGGAAGCGACGGCAGAAGCGAGACTTCCAGAAGGACATCTTACCTGGTCTCTCGT CACTTTCCCGTCCTAAAATCATAGAGGACATTCAGCTAATTGAGGGGTTAGTACAGGCAT CTGGTGGATCATGGGAGTCGAGTTTCACTAGGCGAGCGCGCTGTGGGCGAACAAGAGGTA GAAAGCCCCGCAAAAACCAGCCAGCTACCGTAGAGATAGAAGCTGAGGCCGAGGCCGAGG TGAGCCCGCCCTTGAAACCCGACTCCATTGGCTTAGAAGCTGATGAAAGGGGCATGGTTA GCTGGGGACGAACAACAAGACGGTGTCGCAAGCCGAGATGCCCCTCGGGCAGTAACATCG CGGCTTCGTCTTGAGCGACTGATCTTGGTCAGAGAGAACGTCGGTCACGATCATGTACTT GGGTTCGGGTTCCAGATTTGCCATCGAGATTGCGGTGGACTGGTATAAAGGTAAAAAATC ACAGCCATGAGTGTGCATACTCTGCTGGCCTGTTTGGCCGGCCTCCCCCCTGCAGAGATT TCATGCCTTTTCGGGTCGAAACATGGTGTACATTTTTTTCTATAATAAATTCTTAAACTA GTCTATATGTGACAATTTCTGTAACAGCGTTGTATTAAGCTGGGCTCCAGGGCCTGAGGG GCCTGCTGTAATTCTTGAGATAGTGGCGAGGTACCTTGACTGTCCGGTATTCAGAAATCA AAAAGGCTAATCGGTGTAGTTCTATATAGTTCTTTTAAATCTTGTTTTGTTTTGTGTTGT G