- Transcript HORVU5Hr1G096780.1
- Transcript IDHORVU5Hr1G096780.1
- Gene IDHORVU5Hr1G096780
Barley RTD
Exon Structure of HORVU5Hr1G096780.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 602222746 | 602220245 | - |
| chr5H | 2 | 602224004 | 602223248 | - |
| chr5H | 3 | 602224386 | 602224150 | - |
| chr5H | 4 | 602225112 | 602224892 | - |
| chr5H | 5 | 602226834 | 602226500 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g55130.2 | +2 | 0.0 | 566 | 384/669 (57%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g08000.3.p | +2 | 0.0 | 1424 | 784/1010 (78%) | pacid=32799386 transcript=Bradi1g08000.3 locus=Bradi1g08000 ID=Bradi1g08000.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4052 bp)
>HORVU5Hr1G096780.1 4052 150831_barley_pseudomolecules TTAGAAAGAGAGTAGAAGGTGGTTCCATTCCATCCCCTCTTCCCTTCCACCAGAGGAGAG AGAAAGAAAGAGAGAGAGAGGGAGGCCAGGCCAAACAACGCCAATCCAAAACCCCCAAAA GGAGCAAGGAAAGAGAAGAGAGAGTGGGGAGTGTGTGTGTGAGAGAGAGAACAAACCGAG ATACTCCCACATCCGAGAGCAGACAGTGGTTCCTTCCTTCGTTCGTTCGTTCGTTCCGGC AGGAGCAAGAACCCACCGCTTTCTCCCCCTCTTCTTCCTGGCCTGGCCCCAGCAAATCCG ATTCCAACCTCCGCCCGGATACATCGGAGCTCCGGGTTATTTCTCTTGAAGTGCCATTCA GATTGGGAGGTAGTATTGATTCAGCTGAGCAAGTCGAGCTGTCTAGTTAGCTCAAAGCAT TGAAGATTGGAATTTTACACGTGCATTGCATTAACACTGTGATTTCCCTTTGGTGCCCTG TGATGTGATGATCAGTTCTAGTTGCCGTCCGGGTCAAGGCGAATTTTAGCATGATTGCTA CATGCCCATTGTTTTGACTGTAACACTAATGGGAGCTAAAGTGGAAGCTGAGAGTTACAA TACTGGATATTATGCCACAGGGGATCTGCACATGGACTCAAATGGTTGGCGCTCTCCATA CTATGAGGATAAGCCATCAAATGGGCAGTTGTACAATGGCTTCATGACAAAGCAGGCAGA TGGTTATTCAGAGTACGACAACGAAACGCTGAAGCGCACAATGCTTTCACATGAAGCTAT GTTTAGACAGCAGGTTTATGAACTGCACCGTGTTTACAAAATACAGAGAGACCTGATGAA GCATTATGAAAGCAAAGACACATATGCATACCCAGTACTGGCAGATGCATCACAGACAAA TTCATCATCACAAGTTCCACCAAATGGCTCAAAGATGATATGGCAGATGCCTCTAGGGGC CAAAACATACGGAGAAGCTACTGTTGCAGTGCACACTGATACAAACCACTCCTTGAAGTT CCTTAGTGATGGCAGTGTTCTGCCCTCTCCAGATGGATTCCCCTCAAATGGTGTTGCTTT AAATACCAAGCAAGGCGTTATTGACCTTGAGCTTCCAGCTGATCATTATATAGATGATGA CAACACATCAGATGATAAGCCTATAGATTTCCTTGGAGTAGATTCGGGTACAAAACTGCC GAATGATGCCGGGGTCACATTCAGTGGCGCAGAAGGCTTGGGGAGGTTCAGTGATAATAG CTCAACCTCTGGTTTGCTGGCTACTAATAAACCGGGAGGCTGCCATGTCGCTGACCTGAA TGAGCCAATTACTGGGATGCATATGGGTGGAACAAACGGGTCAGTACCCAGAGGTCTTCC GTATACCTTGGAGAACTCTTGGCGCCAATCTGCAGTGAGATCAGGCACAGCTAACTTTGG TTTCAATAAAGAATACTCCAAAGAGAAGCATACCGATGAAGGAACGAGCTCAAATTTCCT CGATGCAAGTGCCAAACTAAGACAGGAGGAGAAACCATTGATTGATAAAGGAAAACAAGT CAGCAGTCAATCTTTTTTTACACCCAGATACAGCAATACTGATCTGCAAAAATCCTTCAA GGTTGCTGATGGGAGATCTGCAACCAATGAGTTTATTTACCATGGTCAAAATAGTTCAGT TGGATGGTTTTCAAAAGGTCCTATGGGAGCATCTGCCGTCAATAATTTTGCTAGACTTGA CCATCCACATCATTCAAGTATTGGTACACTTGTTGCTCCAATCTCCATTCCTCACATAGA CCATCCTTCCGTCGCCTCTCCTATAGGTTCTTGCACAGTGGACCCAAGGAGCAGTGTTAT CAACAATGCTTTCCAGCGAGTTCCAAGTTTCAATGGATCCTCAACTGTTAATTCATACAA GAGTCCTGGTGCTGTGACCCAAAGCATTGGACCTTCGAGTCACAGCATTGGACCTTCGAT TCATAAGCTTAAAAGATTCGATAATTTGGATGGTAGTTACTTTGGCTTTCCGCTTGATCC ATTTTCCGCATCACGATCCAGACAACAGGTTGCAATGTCAAGTGAGTTGGAGCAAAGGAA CTGCCTGATGTTTGAACATTCAGCTGCACGGCAGTCTCTTGGGTATACTCAGCCCACAAG CACCAAGGGCACAAAGAACTTTAATCTGAATGAAGCACTGTCAGATGGTCCAGAAGAGCT TGTAGAACAGGATGGAAGATCTGTTGGCAGTTTGCAGCATAGTAAAGGTGAGGGATCAGT ATTTGGGATCTCTTGGCTAAAAAATAGAGCTACTTGTGCTGATCCAACAGGTTTGGAAAA GCAAAGGAAGGTGTTTGGCCATTCCAATGGGACTGCAACAGACACGAAAAACAACAACGA CTTGACGGGAACAACACCGATTGTTTGCAATTTGTCAGATTCCGCCTCGACGTCCCTAGG TTGCAGAATTAAGATAGATGATGCTTCTGATGTCATCACTGATAGAACTTGGCTGGTATG TAATAAGACTGAGGAGAGTACCACGAGACATTTACCACTTTCATGCCAGAAACCCTTTGA CAGAGATGAACAAACTGCTGAAGGTGTTGTCAAGAAAAGTGGCGCCGTCATCAGAAATTT ATTTGATCTGAATGATGACATACCACATGAAGATAACTCAGAGTCATCAGTAGTGTCACA TGAATGCGACGTGGCGTCGTTACAGAACAACCATGCTAAGCGCACATTTTTGATTGACTT GGAAGAAATGCCAGCTTGTGAAGATGGTGCTGCCTGGACTTCTCAACAGGAATGCACACC TTCTGGTACGCTTGATGCATGCAAGGAAGCTGATATGTGTTCTCCATCCGCTATGGATGC AGCGCAGATCATTCTTGCGTTGTCAACGGATGTGCTGACCACCACAGGCACACCCGATGA TATGCTGCAGTGGTTTGCTGAGCTCGCGATATCAAGCACGGATGCCCATGCCGATGAGCA AGCAGAAGCCCAGGGTTGCATCAATAATTTCAGTGATGATGGTTTGGATTCATTTGAAGC CTTGACACTGAAGCTGGAAGAGTGCAATACTGATGAGCGTTGGACACCGGAACCACCACT GACAGACGATGAACAAGCTGTTTCAGCGGTGAACCTGCTGTCCAAGCCAAAAAGAGGACC GCAAAGGAAGCGACGGCAGAAGCGAGACTTCCAGAAGGACATCTTACCTGGTCTCTCGTC ACTTTCCCGTCCTAAAATCATAGAGGACATTCAGCTAATTGAGGGGTTAGTACAGGCATC TGGTGGATCATGGGAGTCGAGTTTCACTAGGCGAGCGCGCTGTGGGCGAACAAGAGGTAG AAAGCCCCGCAAAAACCAGCCAGCTACCGTAGAGATAGAAGCTGAGGCCGAGGCCGAGGT GAGCCCGCCCTTGAAACCCGACTCCATTGGCTTAGAAGCTGATGAAAGGGGCATGGTTAG CTGGGGACGAACAACAAGACGGTGTCGCAAGCCGAGATGCCCCTCGGGCAGTAACATCGC GGCTTCGTCTTGAGCGACTGATCTTGGTCAGAGAGAACGTCGGTCACGATCATGTACTTG GGTTCGGGTTCCAGATTTGCCATCGAGATTGCGGTGGACTGGTATAAAGGTAAAAAATCA CAGCCATGAGTGTGCATACTCTGCTGGCCTGTTTGGCCGGCCTCCCCCCTGCAGAGATTT CATGCCTTTTCGGGTCGAAACATGGTGTACATTTTTTTCTATAATAAATTCTTAAACTAG TCTATATGTGACAATTTCTGTAACAGCGTTGTATTAAGCTGGGCTCCAGGGCCTGAGGGG CCTGCTGTAATTCTTGAGATAGTGGCGAGGTACCTTGACTGTCCGGTATTCAGAAATCAA AAAGGCTAATCGGTGTAGTTCTATATAGTTCTTTTAAATCTTGTTTTGTTTTGTGTTGTG CAAGTTGCTGCTTCATTTGGTTGCAATCTTTGCTTCGCAGCCTGTACAAGTTGGAACGCC GATTCGTGTGGTATACCACCGTTGAGGACTTG