Transcript Data
Barley RTD
Links



Exon Structure of HORVU5Hr1G081420.6

ChromosomeExonStartStopDirection
chr5H1564070092564070058-
chr5H2564070540564070357-
chr5H3564070767564070626-
chr5H4564071554564071423-
chr5H5564072128564071643-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os09g36140.1 +2 2e-49 168 88/138 (64%) protein|RNA recognition motif 2 domain containing protein, expressed
TAIR PP10None-----
BRACH PP3 Bradi4g36020.1.p +2 2e-69 218 107/140 (76%) pacid=32789987 transcript=Bradi4g36020.1 locus=Bradi4g36020 ID=Bradi4g36020.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (979 bp)

>HORVU5Hr1G081420.6 979 150831_barley_pseudomolecules
ATGGCCGCCGCCTACACCTCGCGCCTGGGCCTGCCCCCCGCCGCGCACCCGTACGACGAC
GAATCCGTGGCCTGCGCCCTAGGGCATCTCTACCCCACCAAGGATCCGTTCGCCCTGCCG
GCCAGCTGCCTCCTCCCGCCGCCCGAGCTGCCGCTGGCCTTCGGGTTGCCCGCCGGCGGT
CTCGCCCCCGTCTGCTGCTGCGCCGACGCCGCGGGGGCGCCCGCGTTCCCGCCCTTCCCA
TGGGCGAACGTGCCCTCGCCGCCAGTGCCGCCGCGTTGCGGCATCACGGAGATCGACGAG
TTCCGGGAGGTGGAGTCGGAGGATAACCTCTCCCCTTGTTCCGTCCTCACGCCCTGGAGG
AGGCCGACGCCCGCCTCGGCGCTGCCTTCGCCTCCGCCCCTCGTGGTCGGGGGGAAACGG
GCCTTCGACCCCACCAGCGAGAAGACTTCTCTGATGATCTGCAATATCCCCAACGGATTC
GTGTTAGAAGCGGAGGTTCATGGCGATTCTGGACCAGCATTGCGTCCATGAGAACGACAA
TCCTGAATGGCGTGTCGTTGGGGGTGGCAAGTTCGTGAGATCGGAGTATGACTTCCTCTA
CATCCCAATAGACTTCAGGACGAAGTACAACAAGGGCTATGCGTTCGTCAACATGACGAC
GGCGACTGCAGCGCGGCGGCTCCATGCTTTTCTCCACGGGCACCGCTGGGCGCTGGCGGG
CTCTCGGAAGGTATGCGAGGTTGTGCACGCGGACATCCAGGGGGTGGATGCTTTGTCAGC
GCACTTCTCCAGCTCCAAGTTCCCATGCGGTAACAAGGACTTCCTGCCAGTGCGCTTCGG
CCCGCCGCGGGACGGCCTTCGGCCGACGGTGGAGCGTGTAATTGGCCGCACGGTGGTCCA
CCGTCCCGCTGATCAATCTGCTCACCCCACGCCGCGTGCTGCACGTTGCACATATCTGGA
CCTCATGCGTTGATCATTT