Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u37955	88.6	-	-	2858	-367	Containing

Transcripts from Gene HORVU5Hr1G081420

Transcript	Length(bp)	Description
HORVU5Hr1G081420.1	1662	gene=HORVU5Hr1G081420 CDS=1-678
HORVU5Hr1G081420.2	1439	gene=HORVU5Hr1G081420 CDS=1-1035
HORVU5Hr1G081420.3	841	gene=HORVU5Hr1G081420 CDS=139-459
HORVU5Hr1G081420.4	1122	gene=HORVU5Hr1G081420 CDS=2-721
HORVU5Hr1G081420.5	1927	gene=HORVU5Hr1G081420 CDS=2-670
HORVU5Hr1G081420.6	979	gene=HORVU5Hr1G081420 CDS=1-531

Exon Structure of HORVU5Hr1G081420

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os09g36140.1	+1	5e-47	169	88/138 (64%)	protein|RNA recognition motif 2 domain containing protein, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi4g36020.1.p	+1	7e-67	221	111/154 (72%)	pacid=32789987 transcript=Bradi4g36020.1 locus=Bradi4g36020 ID=Bradi4g36020.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons