- Transcript HORVU5Hr1G081420.4
- Transcript IDHORVU5Hr1G081420.4
- Gene IDHORVU5Hr1G081420
Barley RTD
Exon Structure of HORVU5Hr1G081420.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 564069900 | 564069450 | - |
| chr5H | 2 | 564070540 | 564070357 | - |
| chr5H | 3 | 564070768 | 564070626 | - |
| chr5H | 4 | 564071767 | 564071424 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g36140.1 | +2 | 5e-49 | 169 | 88/138 (64%) | protein|RNA recognition motif 2 domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi4g36020.1.p | +2 | 8e-70 | 221 | 111/154 (72%) | pacid=32789987 transcript=Bradi4g36020.1 locus=Bradi4g36020 ID=Bradi4g36020.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1122 bp)
>HORVU5Hr1G081420.4 1122 150831_barley_pseudomolecules GGCCGACGCCCGCCTCGGCGCTGCCTTCGCCTCCGCCCCTCGTGGTCGGGGGGAAACGGG CCTTCGACCCCACCAGCGAGAAGACTTCTCTGATGATCTGCAATATCCCCAACGGATTCG TGTTAGCGGGCTGCTATTCTCTGCTGCCAGTGCCAGCCATTTCCCCCTCTTCTTTTTGCT GAAATACTCTGTGGATTCTTGCTATGTGCGCAGGAAGCGGAGGTTCATGGCGATTCTGGA CCAGCATTGCGTCCATGAGAACGACAATCCTGAATGGCGTGTCGTTGGGGGTGGCAAGTT CGTGAGATCGGAGTATGACTTCCTCTACATCCCAATAGACTTCAGGACGAAGTACAACAA GGGCTATGCGTTCGTCAACATGACGACGGCGACTGCAGCGCGGCGGCTCCATGCTTTTCT CCACGGGCACCGCTGGGCGCTGGCGGGCTCTCGGAAGGTATGCGAGGTTGTGCACGCGGA CATCCAGGGGGTGGATGCTTTGTCAGCGCACTTCTCCAGCTCCAAGTTCCCATGCGGTAA CAAGGACTTCCTGCCAGTGCGCTTCGGCCCGCCGCGGGACGGCCTTCGGCCGACGGTGGA GCGTGTAATTGGCCGCACGGTGGTCCACCGTCCCGCTGATCAATCTGCTCACCCCACGCC GCGTGCTGCACAAAGAGGAGGCAAATGGAAACCTGGTGCAGTGGGGAACAAAACTGTTTG AGCTGGTGGCTACTGGCTAGTGATGTCTTTGCTTCGTCGCGAGGATGGAGGCCTACTCAC CTTAGGGTAGGTGCTTAGTGTGCTTGGTTACCCAAGATGATCAAGTTAGATGGTTCTTTT GGGGCTGCAGGAGTATCTTCTAGTGTCTGTATGACTGTATCCTACCTTGGAGATGTTGGC TTCATTTGTCTTCCCTAGGTAGCAGCAATGCTTGGTGGTTCTGCCATCCGATTTCCTTTG AGTTGTCACTAACTGTACTCATCTGCCCTGAACTTTCTTAGATTGGTTTGTGCATCTGTT CGCATGTTAACCGTATGTTATCCGCCCGTGTATGTTTTTGAAGATTTGGCATCCAGTTGC GATGTGTGATGTTGATGGCGCTGAAAGAAAAGGTTAATGGTG