- Transcript HORVU5Hr1G081420.2
- Transcript IDHORVU5Hr1G081420.2
- Gene IDHORVU5Hr1G081420
Barley RTD
Exon Structure of HORVU5Hr1G081420.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 564069900 | 564069447 | - |
| chr5H | 2 | 564070540 | 564070357 | - |
| chr5H | 3 | 564070767 | 564070626 | - |
| chr5H | 4 | 564071554 | 564071423 | - |
| chr5H | 5 | 564072173 | 564071647 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g36140.1 | +1 | 1e-55 | 189 | 101/155 (65%) | protein|RNA recognition motif 2 domain containing protein, expressed |
| TAIR PP10 | AT3G26120 @ ARAPORT AT3G26120.1 @ TAIR |
+1 | 2e-34 | 136 | 66/152 (43%) | Symbols: TEL1 | terminal EAR1-like 1 | chr3:9546398-9549186 FORWARD LENGTH=615 |
| BRACH PP3 | Bradi4g36020.1.p | +1 | 8e-88 | 271 | 146/217 (67%) | pacid=32789987 transcript=Bradi4g36020.1 locus=Bradi4g36020 ID=Bradi4g36020.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1439 bp)
>HORVU5Hr1G081420.2 1439 150831_barley_pseudomolecules CTTCCTCCTACTTTTCCCCAGCTCAAAAGAAAAATCAAGTTAGCCATGGCCGCCGCCTAC ACCTCGCGCCTGGGCCTGCCCCCCGCCGCGCACCCGTACGACGACGAATCCGTGGCCTGC GCCCTAGGGCATCTCTACCCCACCAAGGATCCGTTCGCCCTGCCGGCCAGCTGCCTCCTC CCGCCGCCCGAGCTGCCGCTGGCCTTCGGGTTGCCCGCCGGCGGTCTCGCCCCCGTCTGC TGCTGCGCCGACGCCGCGGGGGCGCCCGCGTTCCCGCCCTTCCCATGGGCGAACGTGCCC TCGCCGCCAGTGCCGCCGCGTTGCGGCATCACGGAGATCGACGAGTTCCGGGAGGTGGAG TCGGAGGATAACCTCTCCCCTTGTTCCGTCCTCACGCCCTGGAGGAGGCCGACGCCCGCC TCGGCGCTGCCTTCGCCTCCGCCCCTCGTGGTCGGGGGGAAACGGGCCTTCGACCCCACC AGCGAGAAGACTTCTCTGATGATCTGCAATATCCCCAACGGATTCGTGAAGCGGAGGTTC ATGGCGATTCTGGACCAGCATTGCGTCCATGAGAACGACAATCCTGAATGGCGTGTCGTT GGGGGTGGCAAGTTCGTGAGATCGGAGTATGACTTCCTCTACATCCCAATAGACTTCAGG ACGAAGTACAACAAGGGCTATGCGTTCGTCAACATGACGACGGCGACTGCAGCGCGGCGG CTCCATGCTTTTCTCCACGGGCACCGCTGGGCGCTGGCGGGCTCTCGGAAGGTATGCGAG GTTGTGCACGCGGACATCCAGGGGGTGGATGCTTTGTCAGCGCACTTCTCCAGCTCCAAG TTCCCATGCGGTAACAAGGACTTCCTGCCAGTGCGCTTCGGCCCGCCGCGGGACGGCCTT CGGCCGACGGTGGAGCGTGTAATTGGCCGCACGGTGGTCCACCGTCCCGCTGATCAATCT GCTCACCCCACGCCGCGTGCTGCACAAAGAGGAGGCAAATGGAAACCTGGTGCAGTGGGG AACAAAACTGTTTGAGCTGGTGGCTACTGGCTAGTGATGTCTTTGCTTCGTCGCGAGGAT GGAGGCCTACTCACCTTAGGGTAGGTGCTTAGTGTGCTTGGTTACCCAAGATGATCAAGT TAGATGGTTCTTTTGGGGCTGCAGGAGTATCTTCTAGTGTCTGTATGACTGTATCCTACC TTGGAGATGTTGGCTTCATTTGTCTTCCCTAGGTAGCAGCAATGCTTGGTGGTTCTGCCA TCCGATTTCCTTTGAGTTGTCACTAACTGTACTCATCTGCCCTGAACTTTCTTAGATTGG TTTGTGCATCTGTTCGCATGTTAACCGTATGTTATCCGCCCGTGTATGTTTTTGAAGATT TGGCATCCAGTTGCGATGTGTGATGTTGATGGCGCTGAAAGAAAAGGTTAATGGTGGGG