- Transcript HORVU5Hr1G076330.8
- Transcript IDHORVU5Hr1G076330.8
- Gene IDHORVU5Hr1G076330
Barley RTD
Exon Structure of HORVU5Hr1G076330.8
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 550827463 | 550826517 | - |
| chr5H | 2 | 550827855 | 550827744 | - |
| chr5H | 3 | 550828824 | 550828472 | - |
| chr5H | 4 | 550829010 | 550828974 | - |
| chr5H | 5 | 550829877 | 550829819 | - |
| chr5H | 6 | 550830365 | 550829993 | - |
| chr5H | 7 | 550830911 | 550830568 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g32940.1 | +3 | 2e-136 | 410 | 246/356 (69%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi4g34656.1.p | +3 | 3e-152 | 449 | 260/357 (73%) | pacid=32784850 transcript=Bradi4g34656.1 locus=Bradi4g34656 ID=Bradi4g34656.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2225 bp)
>HORVU5Hr1G076330.8 2225 150831_barley_pseudomolecules CCTCATGGCCGTCCCTCTACACCTAGGGTTTTTTGCTTTAGATGCACCGTTTCTAGCCAC AGTGGCTTGGACTTTGGATGGCCCAATAGAACATGAGATCGAGCGCTGGTAGCACATCGG GATCAGGGGTTGTTGGAAGCATAGTAGAGTTTTTAGAAATACTGTAGACATGTCGACTTT GCGTGAAAGATATAAGCCCTGTTTTACTCTGTTGCAGTAGCAATGCGATTTACCATCTCG CGAGCGAGGAGCACCTCAAGGGCGTCAAGGATTTCCTGCGGAAGCATGGGGGCGGGATGG ATCACGTTGATTCATTTAGGATTTCAGAGGATGAGCTTGCGAAGTGGGAGAAGGGCTGTG AGTCATCGATTACAGACGAACAGACATTGACCAAGGGCCTGGTTGGACCATCTCTGGGGC CGTTGAAAGATATCCAAAATGAATCTAGCTCTAAAATTTCGGATAGTTTTGCTGAAACTG ACATCCCATCTTTTCATAATACTGCATCTTGTGTTGTTATGCCTTTACAAAGTCCTACCA ATGGGGCCTATTACCCCACTAGTACAGCGTGTTACGGATCTTCCAACTCCGGAAGTGTTG CTTATTCTGCTCCTTTTGGTACTTCCGGACTGCCCGTCAAACCTTGGGTCACAACACATG AGCATCAGGGTATGCCGAGTACAAACATGTTTCATAGTGCTGATGCACAAATGAAAGGTG CTCAACCTACTTCCCTCGGAAATGGACCAAATTCACCGGCTTCTTCTTTTGTACATGTCC AACAGGGCCACTCCGGAGGAAAATTCAATCAGGGACTGAAAGCAAATGTGCATACTGGTG CTCCTCCTCCTTGGTTAGAAGCTAGTGAGCATGATCCAAAGAATGTGTCACTTCTATCTT CTCTGAAAGGAAAATCGAGAAAACTCAACCCAAAGCGTGTTGGAGCTGCATGGGCAGAGA GGAGAAGAGCTGAAATGGAAATGGAAAAGCGAGGTGAAGTTGTTCCAGAAATGCCTGATG CTAGTTGGCTCCCTAATTTTGGTGGTGTCTGGCAATCTGGTTCGCGAAAGGAATCTAGGA AAGAGTTTGAGAAAAATCATAAGCTTCAAGAGAAGAACAATCCTGAGTTACTCCCTGAGA TAAAACCATATATCAGCAAAAGGATGCGTGTAAGCTCTAATAAAGATGGACAACCCGACA GCACTGTAGAATAGTGAGGAGATGTACATCGTCCTGCCAGATGCTTTATGGTACAAATCT AACTAAATATCGGAAATGGAACAGAAATCAGAGGTGCTGCAAGGAAGTCTGCACATGTGC AATTAAATGTGACATTAGGGTACTCGTAGGCGGTCCTGCTTTTGTGTTTTCCAAATGCAA CGGAACCAACTGTTTCTGGCCTTTCCGTCGCTGTGCTGTTTGTTGTGTGTCAATTGTGGT CATGGTTTCCTGTAGGAGTTGTGCAAAACGGTGCAGTGGGCAGCTCTGGATCGTGTCGCG GTTGATGGAAAGTCCAGATCTCTTGGGTGCATGATTGAAGAGATCATCATCTGTAGTATG ACAGCATGTGCAATGCCAATCAACCCCAGTGAACAAAAGGCGGGAACCCTTTCCAGGAAG AGTTAGCTGGCTTGTAGTGGTAAAAAAAACTTTTCATTATGTTGGTTGGTGCCTTGTTGG TCGTTTGATCGAGCGTGGATTTATTTGCTCCTGATGAGGTGATGACAGGGAGGGTCTGGA ACATGGATGATTGATGGTTGCAGCTGAAGGGGTCGCAGTTGGAGCAAACTGAGAGCCTAG CCCCTGAGCTTGAGCTTGTTTGTCTGATGACATGTGAAGAGACCACGCCATTTTACTATC CTACCTGAGCTTTGGCATCTACTCCTTCCGTACCAAAATGTAAGACGTTGTTGCATTCAA ATTTGAAGTGCAAAAGCAAAAAACGTCTTATGTTTTGCTACAGAGGTAGTAATTTTTTAC GGGAAGATTGTTTTGTTTTAAGGTTGTTTGCCAGTTGGCCTCTAGCCTGAAGGTTATTTT TCTTACTAGATAACCCAAACGTGAGAGAATCAAGAGCATTTAGGACGGGAAGATTACATT ACAAAGAGCATTCGTGTGTTGTTACCCAGTGCATCGGTCAGGTCGCTTTGCGTTTAAAGT CGGATCATCAGTGTGAATGTAATCTCGAGGAAGAGTGGTGGTGGTTGTGGGCACGGCCAT TGTTT