Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u37558	93.2	-	-	5233	-384	Containing

Transcripts from Gene HORVU5Hr1G076330

Transcript	Length(bp)	Description
HORVU5Hr1G076330.1	2021	gene=HORVU5Hr1G076330 CDS=2-1078
HORVU5Hr1G076330.2	2143	gene=HORVU5Hr1G076330 CDS=3-1250
HORVU5Hr1G076330.3	2003	gene=HORVU5Hr1G076330 CDS=289-1206
HORVU5Hr1G076330.4	1845	gene=HORVU5Hr1G076330 CDS=215-1132
HORVU5Hr1G076330.5	1965	gene=HORVU5Hr1G076330 CDS=3-1280
HORVU5Hr1G076330.6	1909	gene=HORVU5Hr1G076330 CDS=299-823
HORVU5Hr1G076330.7	1932	gene=HORVU5Hr1G076330 CDS=1-1269
HORVU5Hr1G076330.8	2225	gene=HORVU5Hr1G076330 CDS=297-1214
HORVU5Hr1G076330.9	2291	gene=HORVU5Hr1G076330 CDS=1-1308
HORVU5Hr1G076330.10	1903	gene=HORVU5Hr1G076330 CDS=2-1078
HORVU5Hr1G076330.11	2045	gene=HORVU5Hr1G076330 CDS=3-677
HORVU5Hr1G076330.12	1873	gene=HORVU5Hr1G076330 CDS=1-993
HORVU5Hr1G076330.13	2190	gene=HORVU5Hr1G076330 CDS=304-1221
HORVU5Hr1G076330.14	2273	gene=HORVU5Hr1G076330 CDS=2-1276
HORVU5Hr1G076330.15	1978	gene=HORVU5Hr1G076330 CDS=2-1111
HORVU5Hr1G076330.16	1118	gene=HORVU5Hr1G076330 CDS=1-399
HORVU5Hr1G076330.17	1801	gene=HORVU5Hr1G076330 CDS=2-667
HORVU5Hr1G076330.18	1839	gene=HORVU5Hr1G076330 CDS=3-674
HORVU5Hr1G076330.19	1712	gene=HORVU5Hr1G076330 CDS=2-1153
HORVU5Hr1G076330.20	2009	gene=HORVU5Hr1G076330 CDS=132-995
HORVU5Hr1G076330.21	1619	gene=HORVU5Hr1G076330 CDS=197-1114
HORVU5Hr1G076330.22	1600	gene=HORVU5Hr1G076330 CDS=3-1034
HORVU5Hr1G076330.23	1680	gene=HORVU5Hr1G076330 CDS=269-793
HORVU5Hr1G076330.24	1676	gene=HORVU5Hr1G076330 CDS=299-823
HORVU5Hr1G076330.25	1728	gene=HORVU5Hr1G076330 CDS=1-1290
HORVU5Hr1G076330.26	1809	gene=HORVU5Hr1G076330 CDS=3-875
HORVU5Hr1G076330.27	1500	gene=HORVU5Hr1G076330 CDS=1-1311
HORVU5Hr1G076330.28	611	gene=HORVU5Hr1G076330 CDS=3-452
HORVU5Hr1G076330.29	1256	gene=HORVU5Hr1G076330 CDS=3-1097
HORVU5Hr1G076330.30	1450	gene=HORVU5Hr1G076330 CDS=3-1292
HORVU5Hr1G076330.31	1283	gene=HORVU5Hr1G076330 CDS=2-1282
HORVU5Hr1G076330.32	1260	gene=HORVU5Hr1G076330 CDS=1-1260
HORVU5Hr1G076330.33	1098	gene=HORVU5Hr1G076330 CDS=1-1041
HORVU5Hr1G076330.34	1252	gene=HORVU5Hr1G076330 CDS=1-1224

Exon Structure of HORVU5Hr1G076330

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os09g32940.1	+1	0.0	544	314/425 (74%)	protein|expressed protein
TAIR PP10	AT4G24900 @ ARAPORT AT4G24900.1 @ TAIR	+1	4e-58	203	157/399 (39%)	Symbols: | unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:12814867-12817388 FORWARD LENGTH=421
BRACH PP3	Bradi4g34656.1.p	+1	0.0	581	323/429 (75%)	pacid=32784850 transcript=Bradi4g34656.1 locus=Bradi4g34656 ID=Bradi4g34656.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons