Transcript Data
Barley RTD
Links



Exon Structure of HORVU5Hr1G076330.28

ChromosomeExonStartStopDirection
chr5H1550827855550827649-
chr5H2550828824550828472-
chr5H3550829024550828974-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os09g32940.1 +3 5e-44 152 111/154 (72%) protein|expressed protein
TAIR PP10None-----
BRACH PP3 Bradi4g34656.1.p +3 5e-43 149 108/153 (71%) pacid=32784850 transcript=Bradi4g34656.1 locus=Bradi4g34656 ID=Bradi4g34656.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (611 bp)

>HORVU5Hr1G076330.28 611 150831_barley_pseudomolecules
ATCTGCCCTTGCAGGTCCAACAGGGCCACTCCGGAGGAAAATTCAATCAGGGACTGAAAG
CAAATGTGCATACTGGTGCTCCTCCTCCTTGGTTAGAAGCTAGTGAGCATGATCCAAAGA
ATGTGTCACTTCTATCTTCTCTGAAAGGAAAATCGAGAAAACTCAACCCAAAGCGTGTTG
GAGCTGCATGGGCAGAGAGGAGAAGAGCTGAAATGGAAATGGAAAAGCGAGGTGAAGTTG
TTCCAGAAATGCCTGATGCTAGTTGGCTCCCTAATTTTGGTGGTGTCTGGCAATCTGGTT
CGCGAAAGGAATCTAGGAAAGAGTTTGAGAAAAATCATAAGCTTCAAGAGAAGAACAATC
CTGAGTTACTCCCTGAGATAAAACCATATATCAGCAAAAGGATGCGTGTAAGCTCTAATA
AAGATGGACAACCCGACAGCACTGTAGAATAGTGAGGAGATGTACATCGTCCTGCCAGAT
GCTTTATGGTACAAATCTAACTAAATATCGGAAATGGTAATTTGGAGCTTTTGACTTGTA
TATTCAGGAACAAGAAATCATGTTTAATTACCGAAGAACACTCCCCTTGTTCAGTTATCG
CTTGATGGTGG