- Transcript HORVU5Hr1G076330.20
- Transcript IDHORVU5Hr1G076330.20
- Gene IDHORVU5Hr1G076330
Barley RTD
Exon Structure of HORVU5Hr1G076330.20
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 550827463 | 550826881 | - |
| chr5H | 2 | 550827855 | 550827772 | - |
| chr5H | 3 | 550828824 | 550828472 | - |
| chr5H | 4 | 550829010 | 550828974 | - |
| chr5H | 5 | 550829877 | 550829817 | - |
| chr5H | 6 | 550830365 | 550829993 | - |
| chr5H | 7 | 550830694 | 550830568 | - |
| chr5H | 8 | 550831318 | 550830928 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g32940.1 | +3 | 6e-148 | 393 | 205/279 (73%) | protein|expressed protein |
| TAIR PP10 | AT4G24900 @ ARAPORT AT4G24900.1 @ TAIR |
+3 | 2e-39 | 150 | 81/187 (43%) | Symbols: | unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:12814867-12817388 FORWARD LENGTH=421 |
| BRACH PP3 | Bradi4g34656.1.p | +3 | 4e-159 | 434 | 216/279 (77%) | pacid=32784850 transcript=Bradi4g34656.1 locus=Bradi4g34656 ID=Bradi4g34656.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2009 bp)
>HORVU5Hr1G076330.20 2009 150831_barley_pseudomolecules TGATCTCCGAACGTTTTTTTTTTTTGTGTGTGTGTGCGGGCTGCGGGGTGGAGTCTGAAC GCTGAGGCCCAAACACGCGCGAGCGAACGCCTGGGCCGCCGCGACCGACAGGCCAGGAGC CCCGCCCCGCGATGCCGCCGAAGCCGCACGCCGCCGGCGGCGGCAGCTTCGAGTACTGCG AGCTGTGCCGCCGCAACCACGACCAGGGCCGGCGCCACCGCTACTTCCCCGCTCACCGCG CCGCTCTCGCGGCCGCGCTCTCCGGCTTCCACGCCAAGCTCGCCGACCTCCGCCGCGCGC TCCTCCACCCCTCCACGCCTGGCCCCCGCTCCCGCCTCTGGTGCCCCTTCTGCTCCGCCG ACCTCGTCGACCTCGACAGCCGCTTCGCCTGTAGCAATGCGATTTACCATCTCGCGAGCG AGGAGCACCTCAAGGGCGTCAAGGATTTCCTGCGGAAGCATGGGGGCGGGATGGATCACG TTGATTCATTTAGGATTTCAGAGGATGAGCTTGCGAAGTGGGAGAAGGGCTGTGAGTCAT CGATTACAGACGAACAGACATTGACCAAGGGCCTGGTTGGACCATCTCTGGGGCCGTTGA AAGATATCCAAAATGAATCTAGCTCTAAAATTTCGGATAGTTTTGCTGAAACTGACATCC CATCTTTTCATAATACTGCATCTTGTGTTGTTATGCCTTTACAAAGTCCTACCAATGGGG CCTATTACCCCACTAGTACAGCGTGTTACGGATCTTCCAACTCCGGAAGTGTTGCTTATT CTGCTCCTTTTGGTACTTCCGGACTGCCCGTCAAACCTTGGGTCACAACACATGAGCATC AGGGTATGCCGAGTACAAACATGTTTCATAGTGCTGATGCACAAATGAAAGGTGCTCAAC CTACTTCCCTCGGAAATGGACCAAATTCACCGGCTTCTTCTTTTGTACATGTGTCCAACA GGGCCACTCCGGAGGAAAATTCAATCAGGGACTGAAAGCAAATGTGCATACTGGTGCTCC TCCTCCTTGGTTAGAAGCTAGTGAGCATGATCCAAAGAATGTGTCACTTCTATCTTCTCT GAAAGGAAAATCGAGAAAACTCAACCCAAAGCGTGTTGGAGCTGCATGGGCAGAGAGGAG AAGAGCTGAAATGGAAATGGAAAAGCGAGGTGAAGTTGTTCCAGAAATGCCTGATGCTAG TTGGCTCCCTAATTTTGGTGGTGTCTGGCAATCTGGTTCGCGAAAGGAATCTAGGAAAGA GTTTGAGAAAAATCATAAGCTTCAAGAGAAGAACAATCCTGAGTTACTCCCTGAGATAAA ACCATATATCAGCAAAAGGATGCGTGTAAGCTCTAATAAAGATGGACAACCCGACAGCAC TGTAGAATAGTGAGGAGATGTACATCGTCCTGCCAGATGCTTTATGGAACAGAAATCAGA GGTGCTGCAAGGAAGTCTGCACATGTGCAATTAAATGTGACATTAGGGTACTCGTAGGCG GTCCTGCTTTTGTGTTTTCCAAATGCAACGGAACCAACTGTTTCTGGCCTTTCCGTCGCT GTGCTGTTTGTTGTGTGTCAATTGTGGTCATGGTTTCCTGTAGGAGTTGTGCAAAACGGT GCAGTGGGCAGCTCTGGATCGTGTCGCGGTTGATGGAAAGTCCAGATCTCTTGGGTGCAT GATTGAAGAGATCATCATCTGTAGTATGACAGCATGTGCAATGCCAATCAACCCCAGTGA ACAAAAGGCGGGAACCCTTTCCAGGAAGAGTTAGCTGGCTTGTAGTGGTAAAAAAAACTT TTCATTATGTTGGTTGGTGCCTTGTTGGTCGTTTGATCGAGCGTGGATTTATTTGCTCCT GATGAGGTGATGACAGGGAGGGTCTGGAACATGGATGATTGATGGTTGCAGCTGAAGGGG TCGCAGTTGGAGCAAACTGAGAGCCTAGCCCCTGAGCTTGAGCTTGTTTGTCTGATGACA TGTGAAGAGACCACGCCATTTTACTATCC