- Transcript HORVU5Hr1G076330.17
- Transcript IDHORVU5Hr1G076330.17
- Gene IDHORVU5Hr1G076330
Barley RTD
Exon Structure of HORVU5Hr1G076330.17
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 550827013 | 550826777 | - |
| chr5H | 2 | 550827463 | 550827103 | - |
| chr5H | 3 | 550827855 | 550827772 | - |
| chr5H | 4 | 550828824 | 550828472 | - |
| chr5H | 5 | 550829010 | 550828974 | - |
| chr5H | 6 | 550829877 | 550829819 | - |
| chr5H | 7 | 550830171 | 550829993 | - |
| chr5H | 8 | 550830365 | 550830281 | - |
| chr5H | 9 | 550830694 | 550830568 | - |
| chr5H | 10 | 550831206 | 550830928 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g32940.1 | +2 | 3e-133 | 252 | 128/157 (82%) | protein|expressed protein |
| TAIR PP10 | AT4G24900 @ ARAPORT AT4G24900.1 @ TAIR |
+2 | 7e-36 | 139 | 66/128 (52%) | Symbols: | unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:12814867-12817388 FORWARD LENGTH=421 |
| BRACH PP3 | Bradi4g34656.1.p | +1 | 3e-140 | 267 | 169/233 (73%) | pacid=32784850 transcript=Bradi4g34656.1 locus=Bradi4g34656 ID=Bradi4g34656.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1801 bp)
>HORVU5Hr1G076330.17 1801 150831_barley_pseudomolecules CCAGGAGCCCCGCCCCGCGATGCCGCCGAAGCCGCACGCCGCCGGCGGCGGCAGCTTCGA GTACTGCGAGCTGTGCCGCCGCAACCACGACCAGGGCCGGCGCCACCGCTACTTCCCCGC TCACCGCGCCGCTCTCGCGGCCGCGCTCTCCGGCTTCCACGCCAAGCTCGCCGACCTCCG CCGCGCGCTCCTCCACCCCTCCACGCCTGGCCCCCGCTCCCGCCTCTGGTGCCCCTTCTG CTCCGCCGACCTCGTCGACCTCGACAGCCGCTTCGCCTGTAGCAATGCGATTTACCATCT CGCGAGCGAGGAGCACCTCAAGGGCGTCAAGGATTTCCTGCGGAAGCATGGGGGCGGGAT GGATCACGTTGATTCATTTAGGATTTCAGAGGATGAGCTTGCGAAGTGGGAGAAGGGCTG TGAGTCATCGATTACAGACGAACAGACATTGACCAAGGGCCTGGTTGGACCATCTCTGGG GCCGTTGAAAGCAATGGGGCCTATTACCCCACTAGTACAGCGTGTTACGGATCTTCCAAC TCCGGAAGTGTTGCTTATTCTGCTCCTTTTGGTACTTCCGGACTGCCCGTCAAACCTTGG GTCACAACACATGAGCATCAGGGTATGCCGAGTACAAACATGTTTCATAGTGCTGATGCA CAAATGAAAGGTGCTCAACCTACTTCCCTCGGAAATGGACCAAATTCACCGGCTTCTTCT TTTGTACATGTCCAACAGGGCCACTCCGGAGGAAAATTCAATCAGGGACTGAAAGCAAAT GTGCATACTGGTGCTCCTCCTCCTTGGTTAGAAGCTAGTGAGCATGATCCAAAGAATGTG TCACTTCTATCTTCTCTGAAAGGAAAATCGAGAAAACTCAACCCAAAGCGTGTTGGAGCT GCATGGGCAGAGAGGAGAAGAGCTGAAATGGAAATGGAAAAGCGAGGTGAAGTTGTTCCA GAAATGCCTGATGCTAGTTGGCTCCCTAATTTTGGTGGTGTCTGGCAATCTGGTTCGCGA AAGGAATCTAGGAAAGAGTTTGAGAAAAATCATAAGCTTCAAGAGAAGAACAATCCTGAG TTACTCCCTGAGATAAAACCATATATCAGCAAAAGGATGCGTGTAAGCTCTAATAAAGAT GGACAACCCGACAGCACTGTAGAATAGTGAGGAGATGTACATCGTCCTGCCAGATGCTTT ATGGAACAGAAATCAGAGGTGCTGCAAGGAAGTCTGCACATGTGCAATTAAATGTGACAT TAGGGTACTCGTAGGCGGTCCTGCTTTTGTGTTTTCCAAATGCAACGGAACCAACTGTTT CTGGCCTTTCCGTCGCTGTGCTGTTTGTTGTGTGTCAATTGTGGTCATGGTTTCCTGTAG GAGTTGTGCAAAACGGTGCAGTGGGCAGCTCTGGATCGTGTCGCGGTTGATGGAAAGTCC AGATCTCTTGGGTGCATGATTGAAGAGATCATCATCTGTAGTATGACAGCATGTGCAATG CCAATCAACCCCAGTGAACAAAAGGCGGGAACCCTTTCCAGGAAGAGTTAGCTGGCTTGT AGTGGGAGGGTCTGGAACATGGATGATTGATGGTTGCAGCTGAAGGGGTCGCAGTTGGAG CAAACTGAGAGCCTAGCCCCTGAGCTTGAGCTTGTTTGTCTGATGACATGTGAAGAGACC ACGCCATTTTACTATCCTACCTGAGCTTTGGCATCTACTCCTTCCGTACCAAAATGTAAG ACGTTGTTGCATTCAAATTTGAAGTGCAAAAGCAAAAAACGTCTTATGTTTTGCTACAGA G