- Transcript HORVU5Hr1G068200.7
- Transcript IDHORVU5Hr1G068200.7
- Gene IDHORVU5Hr1G068200
Barley RTD
Exon Structure of HORVU5Hr1G068200.7
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 516498882 | 516498507 | + |
| chr5H | 2 | 516499417 | 516499330 | + |
| chr5H | 3 | 516499628 | 516499542 | + |
| chr5H | 4 | 516500152 | 516499724 | + |
| chr5H | 5 | 516500536 | 516500277 | + |
| chr5H | 6 | 516501316 | 516500965 | + |
| chr5H | 7 | 516501625 | 516501544 | + |
| chr5H | 8 | 516502584 | 516502239 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g28300.1 | +1 | 5e-164 | 347 | 208/301 (69%) | protein|remorin C-terminal domain containing protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g49050.1.p | +1 | 0.0 | 405 | 239/302 (79%) | pacid=32772094 transcript=Bradi2g49050.1 locus=Bradi2g49050 ID=Bradi2g49050.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2020 bp)
>HORVU5Hr1G068200.7 2020 150831_barley_pseudomolecules CTCGCTGCCTGACACGTCTATTAAAATGCCGAGACTTGTCGCTCTTCCATACCCGCCACT CTTAATGGGCACCGCCGGTTGAGGGGGAGAGCGCAGCGAACTCACTGACGAGCCGGGCGA GCGGCTGGTGGGATTCTTGCTTCCCTTCTTGTTTCTGGGACTGAGAATGCGGGGCGCCGG TGATTGCGGGCTGGAGTTCCGGGGCGTGATGGGGGAGGAGGAGGAGGAGGAGGCCGCGTC GGCGTCGGCGTCGGAGAGGGCAATGCGGCGGCGGCGGCGGTGGGGAGCGGAGGCGGACGA CGGCTACTCGACGAGCTCCACGGGCGGCCGCGGCGGGAGCAGCGGCAGCGGCAGCGGCTC CTTCGGCTGCGACTCGCCTTTGGCCGGATTCGTGCGCGCGGATGGCGACATGGAAGGCAC AGATCTGGAGACAGACGGGCTGGCCGCCACTTCCTCCTCCAGCGCGTTCACGGAGCCGCA CGACGACGAGGAGGCGCAGTCGCGGCAAGAACCGGCCAAGAGTCCGGCGGGCACTGCCAC TGCCATCCGAGAATGCCAGAGCCAGCGGCGGTGCCGGACAGACGCGGTTTACCTGCACGG TAGGAAGGGGCTCAAGCAGCGGCCGGCCTCGCTCGACTTCGGCAGCGCCGGGTTCAGCAG CGGGACTCCGTTTTCTCCGGGCTTTGTGGTGGGAGGCGCGGGGTTTGTGAGCAAGGGACT TGTGTCATCACAGATCAGCTCAGGGGTGTTTCCGAGTCCCGGCACGCCGAGCTACCCGCG GCGGCACCGGCCATCGGCCTTGGGGTACCAGAAGGGGTGGAGCTCGGAGAGAGTGCCCCT TCCTTCCAAAGGTAACAACACTAGGAGGTACCCAGGCAGCAGCATGGCATTTCCTCTCAA CAACAGGAGGACACTGCCCTCAAAATGGGAGGATGCAGAGAGGTGGATCTTCAGTCCCAA GTCTAACGCCGGCGATGCGCTGGGAGAGTTGGGCATTTAGCAGCAAACTCACCTTTCTTG GCGGGAGTACTCATACCTGAACATTATGGTGGGGCGAAAAGTAATGTCCGGAGGTACACG AGTGGAACAGCTGGTGACGAATTTGGTATTGGCATAGTTGGCAGGTCTTCTCTAGCAGCT ATCGGGTCGCCTGCTATCCCGTCTACGACGGTGCGCCGACGACTAGATACTGCAATTGAG TCATCTGTGTCATTGCCTAGCACTCGAGAATCTGTACAAGGCGAAGAGGCTGAGTTTGTA GAAGATTCAGCCCCTGTCGCTACCCCTATAATTTCAAGGAAGGATACCGCGACTCAAACT AGCCCAGATCTAAGTAGGTCTTCTTCGCCCAGCGCCAGGCCTTCATTTGTTCGCTCGTTT TCAATGCAACAAGCCAAGGAGGAGAGCTGTTTCTCTGATCTTGAGATCAGGGATGTGCAG ATGGATGACCGAGTGAGTCTTACTAGATGGTCCAAGAAGCATGTAACACAGGCCTCTAAC AAGAATTCTACAAATATCTTAGAGTGGAACAGAAAAACGGTGGACTCTAAATCTTCTTCC TGGGAATCAACTGAAACAAAGTGCACATTAAAGGTTGAGAGAGAAGAAGCAAAACTTACT GCTTGGGAGAATCTTCAAAAAGCGAAAGCTGAGGCTGCAATTCAGAAGCTAGTGATGAAA CTCGAGAAGAAACGATCATTTTCTCTGGACAGAATTTTGAACACCCTCAGGTCTGCTCAA AGAAAAGCACAAGGGATGCGTGATGCAGCAACAGCAAGCCAAGATGAACATGTTTGCAGA AAGGCCAAAAAGACATCACACGTTACAAAGAATGGCCAGATCAGATCTCTGAGTGGCTGT TTTACTTGCCATGCTTTCTAGTATCATGCAATCCCGCTACTGAGTAAGTTGCATAGTGAT GCCTGCCGTACATGGGGTCTCTGTTGATGAATATTCTAGTGATTTAGATGCCCGTTTTTA ATAAAGCCAGTAGCATCTATTCTATGCTCTTTCTGTCACA