Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u3690593.6++6855-467Containing




Transcripts from Gene HORVU5Hr1G068200

TranscriptLength(bp)Description
HORVU5Hr1G068200.12550gene=HORVU5Hr1G068200 CDS=438-2276
HORVU5Hr1G068200.22451gene=HORVU5Hr1G068200 CDS=659-2386
HORVU5Hr1G068200.36612gene=HORVU5Hr1G068200 CDS=1424-2329
HORVU5Hr1G068200.42339gene=HORVU5Hr1G068200 CDS=327-2165
HORVU5Hr1G068200.52813gene=HORVU5Hr1G068200 CDS=327-2174
HORVU5Hr1G068200.62266gene=HORVU5Hr1G068200 CDS=243-2090
HORVU5Hr1G068200.72020gene=HORVU5Hr1G068200 CDS=167-1000
HORVU5Hr1G068200.82248gene=HORVU5Hr1G068200 CDS=383-2110
HORVU5Hr1G068200.92685gene=HORVU5Hr1G068200 CDS=451-2046
HORVU5Hr1G068200.102110gene=HORVU5Hr1G068200 CDS=431-1675
HORVU5Hr1G068200.112105gene=HORVU5Hr1G068200 CDS=372-1967
HORVU5Hr1G068200.122349gene=HORVU5Hr1G068200 CDS=372-1976
HORVU5Hr1G068200.132362gene=HORVU5Hr1G068200 CDS=322-2088
HORVU5Hr1G068200.142341gene=HORVU5Hr1G068200 CDS=286-1890
HORVU5Hr1G068200.152185gene=HORVU5Hr1G068200 CDS=283-1887
HORVU5Hr1G068200.162605gene=HORVU5Hr1G068200 CDS=283-1308
HORVU5Hr1G068200.171742gene=HORVU5Hr1G068200 CDS=1-1578
HORVU5Hr1G068200.181493gene=HORVU5Hr1G068200 CDS=3-1493
HORVU5Hr1G068200.191667gene=HORVU5Hr1G068200 CDS=192-1667
HORVU5Hr1G068200.202505gene=HORVU5Hr1G068200 CDS=3-1049
HORVU5Hr1G068200.21927gene=HORVU5Hr1G068200 CDS=298-504
HORVU5Hr1G068200.22977gene=HORVU5Hr1G068200 CDS=1-369



Exon Structure of HORVU5Hr1G068200


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os09g28300.2 +2 2e-92 313 196/274 (72%) protein|remorin C-terminal domain containing protein, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g49050.1.p +2 1e-118 389 226/271 (83%) pacid=32772094 transcript=Bradi2g49050.1 locus=Bradi2g49050 ID=Bradi2g49050.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons