- Transcript HORVU5Hr1G068200.3
- Transcript IDHORVU5Hr1G068200.3
- Gene IDHORVU5Hr1G068200
Barley RTD
Exon Structure of HORVU5Hr1G068200.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 516504890 | 516498279 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g28300.2 | +2 | 2e-92 | 313 | 196/274 (72%) | protein|remorin C-terminal domain containing protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g49050.1.p | +2 | 1e-118 | 389 | 226/271 (83%) | pacid=32772094 transcript=Bradi2g49050.1 locus=Bradi2g49050 ID=Bradi2g49050.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (6612 bp)
>HORVU5Hr1G068200.3 6612 150831_barley_pseudomolecules CGGGAGGTGAGGTGGGTGGAGTTGGTGAGGCGAGGTTCCCTGCGCCGCGGGGCAGAAGAA ACAAGAAGCGCGACACCGACATGGACGGGGGCGCCGATCGGGGGGCAACAAAACGAGCAC AGAAAATGCCCGTTGGTTTCAGCGCCGCGCACGTTGCCTCGCCTCGCGGCCGGCCTCGAG ATGCCGGGCGTACGCCGCCCACGTCCCAATCCAATCCACCCCGCCCGCCTCGCTGCCTGA CACGTCTATTAAAATGCCGAGACTTGTCGCTCTTCCATACCCGCCACTCTTAATGGGCAC CGCCGGTTGAGGGGGAGAGCGCAGCGAACTCACTGACGAGCCGGGCGAGCGGCTGGTGGG ATTCTTGCTTCCCTTCTTGTTTCTGGGACTGAGAATGCGGGGCGCCGGTGATTGCGGGCT GGAGTTCCGGGGCGTGATGGGGGAGGAGGAGGAGGAGGAGGCCGCGTCGGCGTCGGCGTC GGAGAGGGCAATGCGGCGGCGGCGGCGGTGGGGAGCGGAGGCGGACGACGGCTACTCGAC GAGCTCCACGGGCGGCCGCGGCGGGAGCAGCGGCAGCGGCAGCGGCTCCTTCGGCTGCGA CTCGGTTGGTCTCGCACTCTCGCCCCCCCTCTCCTCCATCCATTGCCGCGTCGCCTGGCT TCTATTAAGTATCCGCGCATAGGAATCTCTCACCATTGCGAGCTGTGGCAATGGCATGGG CATGGCGCCATGCAGATCTAGCCAGAGCGCACCATGGCCTGTCGCAGGTGACCACAGGGG CCTTTCCAGAAAGTGGATGGTAAAACCCAGGAATGACATGATTAGCAAGTGAATCTAGCG ATCTAAAACAGACAAAGCCGGAGGGCCCGAGGCCTGAGGTCGGAATCGGATAGGCGCCAT CATCGCCATCTTGATTCTTGCAGCAAGCGAAAAAGGAGCGGAGGGGGGCACCACCCACAC CAACACCAACACCACACACCCTGGGATTCTCCAGCTTTACAAGATTAACTTTTTAATCGG TGGTGCTAAGGTGCTTCATGGTTGGCTGCAGCCTTTGGCCGGATTCGTGCGCGCGGATGG CGACATGGAAGGCACAGATCTGGAGACAGACGGGCTGGCCGCCACTTCCTCCTCCAGCGG TGAGCACACAGCTCACAGCTCACGCTTTGTATTCTTACCAGTGTTCTTGCTGCTCCGCTG GAGCGCTCCGCTTTACAGCCCTTCTTAAGCGGGTTCGCCTTCTCATTCTCAAAGCCTCCG CAGCGTTCACGGAGCCGCACGACGACGAGGAGGCGCAGTCGCGGCAAGAACCGGCCAAGA GTCCGGCGGGCACTGCCACTGCCATCCGAGGTACGTACGAGATTTCCAAGCTTGCGACGT ACTGTACTGGTCTGCTAGATGGTGCGAGGTTTTCCAATCTTGCATGCTTGTGTGCTGTTC GACAGAATGCCAGAGCCAGCGGCGGTGCCGGACAGACGCGGTTTACCTGCACGGTAGGAA GGGGCTCAAGCAGCGGCCGGCCTCGCTCGACTTCGGCAGCGCCGGGTTCAGCAGCGGGAC TCCGTTTTCTCCGGGCTTTGTGGTGGGAGGCGCGGGGTTTGTGAGCAAGGGACTTGTGTC ATCACAGATCAGCTCAGGGGTGTTTCCGAGTCCCGGCACGCCGAGCTACCCGCGGCGGCA CCGGCCATCGGCCTTGGGGTACCAGAAGGGGTGGAGCTCGGAGAGAGTGCCCCTTCCTTC CAAAGGTAACAACACTAGGAGGTACCCAGGCAGCAGCATGGCATTTCCTCTCAACAACAG GAGGACACTGCCCTCAAAATGGGAGGATGCAGAGAGGTGGATCTTCAGTCCCAAGTCTAA CGCCGGCGATGCGCGTGAGAAGACCGCCACATTGCCCCATGCTCGACGGCCGAAGGCCAA AAGTGGTCCTCTTGGGCCTCCTGGAAGACTTGGTGGACAGTATTCATCTGTATCTTCATC CGTGTCTTTGTTTGACAGTGGGAGAGTTGGGCATTTAGCAGCAAACTCACCTTTCTTGGC GGGAGTACTCATACCTGAACATTATGGTGGGGCGAAAAGTAATGTCCGGAGGTACACGAG TGGAACAGCTGGTGACGAATTTGGTATTGGCATAGTTGGCAGGTCTTCTCTAGCAGCTAT CGGGTCGCCTGCTATCCCGTCTACGACGGTGCGCCGACGACTAGATACTGCAATTGAGTC ATCTGTGTCATTGCCTAGCACTCGAGAATCTGTACAAGGTATTAAGAAATTGCTATCCTT TGTTTTTAGCCTATTGCTTGGTGTTGACTTATGGGTCTATAGAGTATAAAAGTGTAGAGG GCAACCCTCCATTTAAGGTTTGCGGTAGTCTCTGGTTGCTAACTTGTGGTTCTCTCTGTT TGAGGTTTATGGTAGTCTATTAGCTTGTGGTAGTTTCTCTGTTTGAGGCAGTCTCTCGGA TTTACGGGTCTATGAAGTATAAAGCATTGTCAAATTGTGAAGCTCCTCGTAAGTTGCATT ATACACATTAATTTTTGGCACTTGGTATCTTTGGTAATTGATTTGATCATAGCACTTCTA TGCTGAATATCACCATAACTCTATAAGTTATCTTACGCTTTTAATGTACTTAATGAAGAT TAAGTAAATCTTTTGGCTGATGCTTCTTTATTTGGTTTCATATCAGGCGAAGAGGCTGAG TTTGTAGAAGATTCAGCCCCTGTCGCTACCCCTATAATTTCAAGGAAGGATACCGCGACT CAAACTAGCCCAGATCTAAGTAGGTCTTCTTCGCCCAGCGCCAGGCCTTCATTTGTTCGC TCGTTTTCAATGCAACAAGCCAAGGAGGAGAGCTGTTTCTCTGATCTTGAGATCAGGGAT GTGCAGATGGATGACCGAGTGAGTCTTACTAGATGGTCCAAGAAGCATGTAACACAGGCC TCTAACAAGAATTCTACAAATATCTTAGAGTGGAACAGAAAAACGGTGGACTCTAAATCT TCTTCCTGGGAATCAACTGAAACAAAGTGCACATTAAAGTAAGGGACCAGTGCTTATGAT AAATGCTGCCTCTTTGTTCAGGCATACCTCTGATATTATAAACCACTTAACAGTAATACT TGAAGCTTAACTTCTGAAAATATATAACATTATTTGCCTATCTCGTATGATGCTCAAACA TCCAAATCTTTTTACTATTGCTGAAACTCTGCAACATGTATTCCGTGAAAACATGAAATG CTGACCGCTTTATCATTATTAAAAGGGTTGAGAGAGAAGAAGCAAAACTTACTGCTTGGG AGAATCTTCAAAAAGCGAAAGCTGAGGCTGCAATTCAGAAGCTAGTGGTATGTGCTTCAG GCTATTTCTAACTTTTTTTTTATGTACTCAGTAAGACCCCTACTGAAATATTTTACTAAT TCATAAATTCTATAGTAGCAATGGGCCAAAGGATCCAAATAGTGAACTAAGCAAGTCTAG CTACAGAACAATATAAAATCTGATTAGTCTTAGGATTGGCATCCTCTTCCTCCATCAAAA TAAGCATGCGAGTACATTTTCCAAAAGATCAACTTTTGTGTGCAAGCAAGTATCCAATTC ATTAAACAGGGCATCAGTCATATTCTTGGGAGGGCTTACTTTCCGCCATTCTTTGTCAGG CAGTCTTTTTCCATCTATATTTATTTGCAGGAATCTTATCAAACATACATCTCCAGCCGC CCAAGTATAGTTTTTGGGCCTACCTCATTTTAGGAGAAAAAAAGTGGCACCCGTATGAAC TTTAGCATGTCTACTTGTAACTGTTGTCTCATGTCATTGGTAAAAGAGTATATTTTATAT CTGTATATGCTCATAACGGAATGATGCATGCATTATTTACTGTATGATAGCTCATTGTTT TGTTATTCTCTATTGCCGTCTAGTTGACATTCTATTGTATCCATACTTCCATTATCTCAG ATGAAACTCGAGAAGAAACGATCATTTTCTCTGGACAGAATTTTGAACACCCTCAGGTCT GCTCAAAGAAAAGCACAAGGGATGCGTGATGCAGCAACAGCAAGCCAAGATGAACATGTT TGCAGAAAGGCCAAAAAGACATCACACGTTACAAAGAATGGCCAGATCAGATCTCTGAGT GGCTGTTTTACTTGCCATGCTTTCTAGTATCATGCAATCCCGCTACTGAGTAAGTTGCAT AGTGATGCCTGCCGTACATGGGGTCTCTGTTGATGAATATTCTAGTGATTTAGATGCCCG TTTTTAATAAAGCCAGTAGCATCTATTCTATGCTCTTTCTGTCACATCAGGCAGAATAAT ATAAACTGTGAAATTGTCAATGCTCACTTTTCAGTGTTGTCCTTGAAAATAGTTATGTTT AATTGTATGCTGCAATGATGCTTGCAGTTCATAATTATGATTTATGTCACCAAATATAGC ATGTCGATAGCTCTTATGTTCACACATAAATACATAATCCATTAAACTTCCTTAACATGT TCCATATGCTTGTCATTTTTGACTCTGTCGATCCTTTAAGAACATAATTATTCAGAAATG ATTTGAGGCAACTTGAGGTAGCATTGTAGCATTGGAACTTCATGTAACATATTCCATAGG CTAACCTGTTCCTGAGGGTAATCACCTCTAGGTGAGGTAGCATTGTAGCATTGGAACTTC ATGTAACATATTCCATAGGCTAACCTGTTCCTGAGGGTAATCACCTCTAGGTGAGGTAGC ATTGTAGCATTGGAACTTCATGTAACATATTCCATAGGCTAACCTGTTCCTGAGGGTAAT CACCTCTAGGTGAGGTAGCATTGTCACCTGTAAATATTCTGAGCTTGTAAATTGCCTAAG ATCTGTTACACTGTCGATAAATAAGCAACCATTAGTCTAAATCACATTTCAAGCTTAGGA ACCTACAGTATCATCCATATATCAACTGTTTCCTACTCCCTCCGTTTCCAAATATAAGAC CTTTTAGAGATTTTAATACGGACTACATACAAATGTATATAGACGCACTTTAGAGTGTAG ATTCACTCATTTTGCTTTGTATGTAGTATGTATTGGAATCTCTAAAATGTCTTATGTTTA GGAACGGAGAGAGCACATCTTATCTCCTCATGCTTTCAAGGAGAAGTGCCTCACATACTG GCATATATCAACCCCATATATATTTTATTTTGTTGAGGATATCAACCCGTAAAGAGAGAT CTAAAGGATTGGAGCATCACCAAAGAACTAGCCATGGACAGGGGTGCGTGGAAGCTTGCT ATCCATGTGCCAGAACCATGAGTTGGTCGTAAGATCTTATGAGTTTCATCTCTAGCCTAG CCCAACTTGTTTGGGACTAAAGGCTTTGTTGTTGTTTGTTTGTTTGTTTGAGGATATCAA CCCCATAGTTCTGATAGCCTGCTTGTGCCAGCCAAACCAACTTCACCTCTGATTTTATCT CCCCTTTCTGCCACTTCATCTTCCTAATTCTCAATAGCATCAGGAACATAAGGAAGATAA TACAATATATGCACGTTCCATATGCTTGCCGCTTTTGACTGTGTTGATCATTTAAGAACA TAATTATTCAGAAATGATACGAGGCGGGTTGAGGTAGCATTGTAGCGCTGGTACTTCATG TAACATGCTCCATAGGCTAACCTGTTCCTACAGCATGTAACATAGGCTAATCACCTCAGG TAGCATTGTAAACCTGTAAATGTACGGAGCTTGTAAATTGCCTAAGATCTACGTATTACA CTGTCGATAAATAAGCAGCCACTTCGCCGTCCTTTATTCACGGTCAAATTAGGACCCCCC AAAAAATATATACATATCAAGCACCACAAATGCCATGCTTTAGCTCTTGACAACGGGACC TGTTTTTTCCTTTCTCTTCAGGGATCTGGAGGACCTAGGTTCACTCTTCAGGCCCTTCAG CAGGGAAGTCCGGGTGAAGTTCAGACAGAGACTCACTCTGTGAGTGAAGAATCCAAACAA TCCTCAACTCACCCCCGTCGCATTTTCAGAAGAATATGCCGCTTGCGGCCTGAGCAGGGA CCATGCGTGCGCTGGCTCTCACCATATGGCTCTGCTCATCTGCGCAATCTGCCAAGGGGA CAAGAGAAAATGGAGGCACCGAGGAAAAGGAGCGATGGTGCCTCTGCGTCACCACATGCA CCGACCCGGCAGGCCAGCAGCTAGCACAATGGTAAACAGGTGAAGGCCTCCTTTATCGTT GGCCTTTGCTGGTCCTGTAGTTGCTTCAGGTGTAGCCCATTTGGGTGGGATTGGATGTAC GCCACCATAGAACATTATTAGTATTATTATTTTGCTGCAATCGTTGCTGCTCTCGTGTCT TTACTTTGAGCTGTAGGAGATGCTTCCTCAGGAGGGAAAAAAAAGGTGAACCAGATAAGG CGTTTTGCAGCTTTCCAGCGTTCAGATAGAAAGCAAGCGTCGGGATAGAAAGTGTCCTAC GACCACGAAGTGAGGTTCCTCCCGTGACTTGACCCTCGTGCACCCTCACCCGTAGGCCGA AAGAAAGCAACGTTATGCAGGTCCAAACAAAACCGGATGCTTTTTGGCTGACAAGTTACC ACATGATGTCAC