Transcript Data
Barley RTD
Links



Exon Structure of HORVU5Hr1G068200.21

ChromosomeExonStartStopDirection
chr5H1516501176516501032+
chr5H2516501316516501247+
chr5H3516501625516501544+
chr5H4516502467516502239+
chr5H5516504580516504180+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g36760.1 +1 5e-43 151 79/121 (65%) protein|remorin C-terminal domain containing protein, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g49050.1.p +1 9e-47 163 92/120 (77%) pacid=32772094 transcript=Bradi2g49050.1 locus=Bradi2g49050 ID=Bradi2g49050.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (927 bp)

>HORVU5Hr1G068200.21 927 150831_barley_pseudomolecules
CGCGACTCAAACTAGCCCAGATCTAAGTAGGTCTTCTTCGCCCAGCGCCAGGCCTTCATT
TGTTCGCTCGTTTTCAATGCAACAAGCCAAGGAGGAGAGCTGTTTCTCTGATCTTGAGAT
CAGGGATGTGCAGATGGATGACCGAAGTGGAACAGAAAAACGGTGGACTCTAAATCTTCT
TCCTGGGAATCAACTGAAACAAAGTGCACATTAAAGGTTGAGAGAGAAGAAGCAAAACTT
ACTGCTTGGGAGAATCTTCAAAAAGCGAAAGCTGAGGCTGCAATTCAGAAGCTAGTGATG
AAACTCGAGAAGAAACGATCATTTTCTCTGGACAGAATTTTGAACACCCTCAGGTCTGCT
CAAAGAAAAGCACAAGGGATGCGTGATGCAGCAACAGCAAGCCAAGATGAACATGTTTGC
AGAAAGGCCAAAAAGACATCACACGTTACAAAGAATGGCCAGATCAGATCTCTGAGTGGC
TGTTTTACTTGCCATGCTTTCTAGTATCATGCAATCCCGCTACTGAGGATCTGGAGGACC
TAGGTTCACTCTTCAGGCCCTTCAGCAGGGAAGTCCGGGTGAAGTTCAGACAGAGACTCA
CTCTGTGAGTGAAGAATCCAAACAATCCTCAACTCACCCCCGTCGCATTTTCAGAAGAAT
ATGCCGCTTGCGGCCTGAGCAGGGACCATGCGTGCGCTGGCTCTCACCATATGGCTCTGC
TCATCTGCGCAATCTGCCAAGGGGACAAGAGAAAATGGAGGCACCGAGGAAAAGGAGCGA
TGGTGCCTCTGCGTCACCACATGCACCGACCCGGCAGGCCAGCAGCTAGCACAATGGTAA
ACAGGTGAAGGCCTCCTTTATCGTTGGCCTTTGCTGGTCCTGTAGTTGCTTCAGGTGTAG
CCCATTTGGGTGGGATTGGATGTACGC