- Transcript HORVU5Hr1G068200.20
- Transcript IDHORVU5Hr1G068200.20
- Gene IDHORVU5Hr1G068200
Barley RTD
Exon Structure of HORVU5Hr1G068200.20
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 516499628 | 516499464 | + |
| chr5H | 2 | 516501316 | 516499724 | + |
| chr5H | 3 | 516501625 | 516501544 | + |
| chr5H | 4 | 516502467 | 516502239 | + |
| chr5H | 5 | 516504615 | 516504180 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g28300.2 | +3 | 1e-106 | 339 | 215/318 (68%) | protein|remorin C-terminal domain containing protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g49050.1.p | +3 | 7e-140 | 427 | 248/309 (80%) | pacid=32772094 transcript=Bradi2g49050.1 locus=Bradi2g49050 ID=Bradi2g49050.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2505 bp)
>HORVU5Hr1G068200.20 2505 150831_barley_pseudomolecules CTTGCTGCTCCGCTGGAGCGCTCCGCTTTACAGCCCTTCTTAAGCGGGTTCGCCTTCTCA TTCTCAAAGCCTCCGCAGCGTTCACGGAGCCGCACGACGACGAGGAGGCGCAGTCGCGGC AAGAACCGGCCAAGAGTCCGGCGGGCACTGCCACTGCCATCCGAGAATGCCAGAGCCAGC GGCGGTGCCGGACAGACGCGGTTTACCTGCACGGTAGGAAGGGGCTCAAGCAGCGGCCGG CCTCGCTCGACTTCGGCAGCGCCGGGTTCAGCAGCGGGACTCCGTTTTCTCCGGGCTTTG TGGTGGGAGGCGCGGGGTTTGTGAGCAAGGGACTTGTGTCATCACAGATCAGCTCAGGGG TGTTTCCGAGTCCCGGCACGCCGAGCTACCCGCGGCGGCACCGGCCATCGGCCTTGGGGT ACCAGAAGGGGTGGAGCTCGGAGAGAGTGCCCCTTCCTTCCAAAGGTAACAACACTAGGA GGTACCCAGGCAGCAGCATGGCATTTCCTCTCAACAACAGGAGGACACTGCCCTCAAAAT GGGAGGATGCAGAGAGGTGGATCTTCAGTCCCAAGTCTAACGCCGGCGATGCGCGTGAGA AGACCGCCACATTGCCCCATGCTCGACGGCCGAAGGCCAAAAGTGGTCCTCTTGGGCCTC CTGGAAGACTTGGTGGACAGTATTCATCTGTATCTTCATCCGTGTCTTTGTTTGACAGTG GGAGAGTTGGGCATTTAGCAGCAAACTCACCTTTCTTGGCGGGAGTACTCATACCTGAAC ATTATGGTGGGGCGAAAAGTAATGTCCGGAGGTACACGAGTGGAACAGCTGGTGACGAAT TTGGTATTGGCATAGTTGGCAGGTCTTCTCTAGCAGCTATCGGGTCGCCTGCTATCCCGT CTACGACGGTGCGCCGACGACTAGATACTGCAATTGAGTCATCTGTGTCATTGCCTAGCA CTCGAGAATCTGTACAAGGTATTAAGAAATTGCTATCCTTTGTTTTTAGCCTATTGCTTG GTGTTGACTTATGGGTCTATAGAGTATAAAAGTGTAGAGGGCAACCCTCCATTTAAGGTT TGCGGTAGTCTCTGGTTGCTAACTTGTGGTTCTCTCTGTTTGAGGTTTATGGTAGTCTAT TAGCTTGTGGTAGTTTCTCTGTTTGAGGCAGTCTCTCGGATTTACGGGTCTATGAAGTAT AAAGCATTGTCAAATTGTGAAGCTCCTCGTAAGTTGCATTATACACATTAATTTTTGGCA CTTGGTATCTTTGGTAATTGATTTGATCATAGCACTTCTATGCTGAATATCACCATAACT CTATAAGTTATCTTACGCTTTTAATGTACTTAATGAAGATTAAGTAAATCTTTTGGCTGA TGCTTCTTTATTTGGTTTCATATCAGGCGAAGAGGCTGAGTTTGTAGAAGATTCAGCCCC TGTCGCTACCCCTATAATTTCAAGGAAGGATACCGCGACTCAAACTAGCCCAGATCTAAG TAGGTCTTCTTCGCCCAGCGCCAGGCCTTCATTTGTTCGCTCGTTTTCAATGCAACAAGC CAAGGAGGAGAGCTGTTTCTCTGATCTTGAGATCAGGGATGTGCAGATGGATGACCGAGT GAGTCTTACTAGATGGTCCAAGAAGCATGTAACACAGGCCTCTAACAAGAATTCTACAAA TATCTTAGAGTGGAACAGAAAAACGGTGGACTCTAAATCTTCTTCCTGGGAATCAACTGA AACAAAGTGCACATTAAAGGTTGAGAGAGAAGAAGCAAAACTTACTGCTTGGGAGAATCT TCAAAAAGCGAAAGCTGAGGCTGCAATTCAGAAGCTAGTGATGAAACTCGAGAAGAAACG ATCATTTTCTCTGGACAGAATTTTGAACACCCTCAGGTCTGCTCAAAGAAAAGCACAAGG GATGCGTGATGCAGCAACAGCAAGCCAAGATGAACATGTTTGCAGAAAGGCCAAAAAGAC ATCACACGTTACAAAGAATGGCCAGATCAGATCTCTGAGTGGCTGTTTTACTTGCCATGC TTTCTAGTATCATGCAATCCCGCTACTGAGGATCTGGAGGACCTAGGTTCACTCTTCAGG CCCTTCAGCAGGGAAGTCCGGGTGAAGTTCAGACAGAGACTCACTCTGTGAGTGAAGAAT CCAAACAATCCTCAACTCACCCCCGTCGCATTTTCAGAAGAATATGCCGCTTGCGGCCTG AGCAGGGACCATGCGTGCGCTGGCTCTCACCATATGGCTCTGCTCATCTGCGCAATCTGC CAAGGGGACAAGAGAAAATGGAGGCACCGAGGAAAAGGAGCGATGGTGCCTCTGCGTCAC CACATGCACCGACCCGGCAGGCCAGCAGCTAGCACAATGGTAAACAGGTGAAGGCCTCCT TTATCGTTGGCCTTTGCTGGTCCTGTAGTTGCTTCAGGTGTAGCCCATTTGGGTGGGATT GGATGTACGCCACCATAGAACATTATTAGTATTATTATTTTGCTG