- Transcript HORVU5Hr1G068200.11
- Transcript IDHORVU5Hr1G068200.11
- Gene IDHORVU5Hr1G068200
Barley RTD
Exon Structure of HORVU5Hr1G068200.11
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 516499417 | 516498992 | + |
| chr5H | 2 | 516499628 | 516499542 | + |
| chr5H | 3 | 516500536 | 516499724 | + |
| chr5H | 4 | 516501316 | 516500965 | + |
| chr5H | 5 | 516501625 | 516501544 | + |
| chr5H | 6 | 516502583 | 516502239 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g28300.2 | +3 | 0.0 | 608 | 382/563 (68%) | protein|remorin C-terminal domain containing protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g49050.1.p | +3 | 0.0 | 727 | 445/558 (80%) | pacid=32772094 transcript=Bradi2g49050.1 locus=Bradi2g49050 ID=Bradi2g49050.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2105 bp)
>HORVU5Hr1G068200.11 2105 150831_barley_pseudomolecules GCATGGGCATGGCGCCATGCAGATCTAGCCAGAGCGCACCATGGCCTGTCGCAGGTGACC ACAGGGGCCTTTCCAGAAAGTGGATGGTAAAACCCAGGAATGACATGATTAGCAAGTGAA TCTAGCGATCTAAAACAGACAAAGCCGGAGGGCCCGAGGCCTGAGGTCGGAATCGGATAG GCGCCATCATCGCCATCTTGATTCTTGCAGCAAGCGAAAAAGGAGCGGAGGGGGGCACCA CCCACACCAACACCAACACCACACACCCTGGGATTCTCCAGCTTTACAAGATTAACTTTT TAATCGGTGGTGCTAAGGTGCTTCATGGTTGGCTGCAGCCTTTGGCCGGATTCGTGCGCG CGGATGGCGACATGGAAGGCACAGATCTGGAGACAGACGGGCTGGCCGCCACTTCCTCCT CCAGCGCGTTCACGGAGCCGCACGACGACGAGGAGGCGCAGTCGCGGCAAGAACCGGCCA AGAGTCCGGCGGGCACTGCCACTGCCATCCGAGAATGCCAGAGCCAGCGGCGGTGCCGGA CAGACGCGGTTTACCTGCACGGTAGGAAGGGGCTCAAGCAGCGGCCGGCCTCGCTCGACT TCGGCAGCGCCGGGTTCAGCAGCGGGACTCCGTTTTCTCCGGGCTTTGTGGTGGGAGGCG CGGGGTTTGTGAGCAAGGGACTTGTGTCATCACAGATCAGCTCAGGGGTGTTTCCGAGTC CCGGCACGCCGAGCTACCCGCGGCGGCACCGGCCATCGGCCTTGGGGTACCAGAAGGGGT GGAGCTCGGAGAGAGTGCCCCTTCCTTCCAAAGGTAACAACACTAGGAGGTACCCAGGCA GCAGCATGGCATTTCCTCTCAACAACAGGAGGACACTGCCCTCAAAATGGGAGGATGCAG AGAGGTGGATCTTCAGTCCCAAGTCTAACGCCGGCGATGCGCGTGAGAAGACCGCCACAT TGCCCCATGCTCGACGGCCGAAGGCCAAAAGTGGTCCTCTTGGGCCTCCTGGAAGACTTG GTGGACAGTATTCATCTGTATCTTCATCCGTGTCTTTGTTTGACAGTGGGAGAGTTGGGC ATTTAGCAGCAAACTCACCTTTCTTGGCGGGAGTACTCATACCTGAACATTATGGTGGGG CGAAAAGTAATGTCCGGAGGTACACGAGTGGAACAGCTGGTGACGAATTTGGTATTGGCA TAGTTGGCAGGTCTTCTCTAGCAGCTATCGGGTCGCCTGCTATCCCGTCTACGACGGTGC GCCGACGACTAGATACTGCAATTGAGTCATCTGTGTCATTGCCTAGCACTCGAGAATCTG TACAAGGCGAAGAGGCTGAGTTTGTAGAAGATTCAGCCCCTGTCGCTACCCCTATAATTT CAAGGAAGGATACCGCGACTCAAACTAGCCCAGATCTAAGTAGGTCTTCTTCGCCCAGCG CCAGGCCTTCATTTGTTCGCTCGTTTTCAATGCAACAAGCCAAGGAGGAGAGCTGTTTCT CTGATCTTGAGATCAGGGATGTGCAGATGGATGACCGAGTGAGTCTTACTAGATGGTCCA AGAAGCATGTAACACAGGCCTCTAACAAGAATTCTACAAATATCTTAGAGTGGAACAGAA AAACGGTGGACTCTAAATCTTCTTCCTGGGAATCAACTGAAACAAAGTGCACATTAAAGG TTGAGAGAGAAGAAGCAAAACTTACTGCTTGGGAGAATCTTCAAAAAGCGAAAGCTGAGG CTGCAATTCAGAAGCTAGTGATGAAACTCGAGAAGAAACGATCATTTTCTCTGGACAGAA TTTTGAACACCCTCAGGTCTGCTCAAAGAAAAGCACAAGGGATGCGTGATGCAGCAACAG CAAGCCAAGATGAACATGTTTGCAGAAAGGCCAAAAAGACATCACACGTTACAAAGAATG GCCAGATCAGATCTCTGAGTGGCTGTTTTACTTGCCATGCTTTCTAGTATCATGCAATCC CGCTACTGAGTAAGTTGCATAGTGATGCCTGCCGTACATGGGGTCTCTGTTGATGAATAT TCTAGTGATTTAGATGCCCGTTTTTAATAAAGCCAGTAGCATCTATTCTATGCTCTTTCT GTCAC