- Transcript HORVU5Hr1G054500.3
- Transcript IDHORVU5Hr1G054500.3
- Gene IDHORVU5Hr1G054500
Barley RTD
Exon Structure of HORVU5Hr1G054500.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 428280957 | 428280777 | + |
| chr5H | 2 | 428281973 | 428281841 | + |
| chr5H | 3 | 428282429 | 428282078 | + |
| chr5H | 4 | 428282708 | 428282511 | + |
| chr5H | 5 | 428283382 | 428283299 | + |
| chr5H | 6 | 428283709 | 428283628 | + |
| chr5H | 7 | 428283908 | 428283785 | + |
| chr5H | 8 | 428284132 | 428284091 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g12800.1 | +3 | 5e-100 | 184 | 97/125 (78%) | protein|zinc finger Ran-binding domain-containing protein 2, putative, expressed |
| TAIR PP10 | AT1G50300 @ ARAPORT AT1G50300.1 @ TAIR |
+3 | 4e-63 | 143 | 78/125 (62%) | Symbols: TAF15 | TBP-associated factor 15 | chr1:18628818-18631662 REVERSE LENGTH=372 |
| BRACH PP3 | Bradi1g19280.1.p | +3 | 7e-85 | 187 | 102/125 (82%) | pacid=32805605 transcript=Bradi1g19280.1 locus=Bradi1g19280 ID=Bradi1g19280.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1196 bp)
>HORVU5Hr1G054500.3 1196 150831_barley_pseudomolecules ATCGCCCACGAAACGCCATCCCCAAGCACGCAGTGAGCGCTGAGATCCGCCCAAACCTAG CGCCGTCGCGGCTTCTCAACCACGCGGCCGCCGCCGCGTTCCCGTCGGCAGAGCACGAGG CGCGCGGTCCTCCGCGCACGCCTTCGATCCGCGCCGTCAACCTCGGCGCATCCCGGACTA GATGGCTGGATATATGTCTCGCGGACCCCCAAATGGCTCTATTTATGTATGCAATCTGCC TCCTGGAACTGATGAGACCATGTTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGGT ATGGGTCTTACCAGAAGGACAAAAGGACTGGCCACCCAAAGATTTGGATATACAGGGACA AAGTTACAAATGAACCAAAGGGTGATGCAACAGTCACCTATGAAGATCCCCATGCTGCTT CAGCTGCTGTGGAATGGTTCAACAATAAGGATTTCCATGGAAGCATCATCCAGGTTCACA TAGCTGAGTCAAAAAACAAAGACACAGTTGATAACTTCACCAATGTGAGCGTCGATGCTG AGATTGTTGGACAAGATGAATTGGATAACGGGTCAGGCAGGGGTAGAGGACGTGGTGATG GTCCAGCAAAAGCTTGGCAGCAAGATGGAGATTGGATGTGTCCAAATACAAGGTCTGTTA CGATTGCTGTGGCAATGTAAATTTTGCCTTCCGTGGTGTGTGTAATCGTTGTGGAGCCTC TCGCCCTGCTGGTGTTAGTGGATCAGGTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGTAG TGATGATGCAAGAGGCAGTCGTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGGCTGTTTGG TCCTAATGATTGGCCATGTACGATGTGTGGCAATGTAAACTGGGCCAAGCGGACCAAATG TAATGTCTGTAACACCTCTAGGCCAGGTCACAATGAAGGTGGTGTGAGAGGTGGCCGGGG TGGCGGCTTTAAAGAACTTGATGAAGAAGAACTAGAAGAAGTACGGAGGCGCCGGAAAGA AGCTGAGGAGGATGATGGAGAAATGTATGATGAATTTGGTAACCTGAAAAAGAAGTTCCG TGCTAAGTCACATCAAACTGAGAGTACACCAACTCTTCCTGGGTCTGGACGTGCTGGATG GGAAGTTGAGCACCGTTCCACTGAGAGAGAAGGCCGAGAGAGGAGCAGAGATCGGG