Exon Structure of HORVU5Hr1G054500.16

ChromosomeExonStartStopDirection
chr5H1428280957428280880+
chr5H2428281973428281841+
chr5H3428282429428282078+
chr5H4428282708428282511+
chr5H5428283382428283299+
chr5H6428283908428283628+
chr5H7428284223428284091+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os09g12800.1 +2 3e-101 184 97/125 (78%) protein|zinc finger Ran-binding domain-containing protein 2, putative, expressed
TAIR PP10 AT1G50300 @ ARAPORT
AT1G50300.1 @ TAIR
+2 4e-62 143 78/125 (62%) Symbols: TAF15 | TBP-associated factor 15 | chr1:18628818-18631662 REVERSE LENGTH=372
BRACH PP3 Bradi1g19280.1.p +2 1e-90 187 102/125 (82%) pacid=32805605 transcript=Bradi1g19280.1 locus=Bradi1g19280 ID=Bradi1g19280.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (1259 bp)

>HORVU5Hr1G054500.16 1259 150831_barley_pseudomolecules
GTCGGCAGAGCACGAGGCGCGCGGTCCTCCGCGCACGCCTTCGATCCGCGCCGTCAACCT
CGGCGCATCCCGGACTAGATGGCTGGATATATGTCTCGCGGACCCCCAAATGGCTCTATT
TATGTATGCAATCTGCCTCCTGGAACTGATGAGACCATGTTGGCTGAATATTTTGGCACC
ATAGGGTTGCTAAAGGTATGGGTCTTACCAGAAGGACAAAAGGACTGGCCACCCAAAGAT
TTGGATATACAGGGACAAAGTTACAAATGAACCAAAGGGTGATGCAACAGTCACCTATGA
AGATCCCCATGCTGCTTCAGCTGCTGTGGAATGGTTCAACAATAAGGATTTCCATGGAAG
CATCATCCAGGTTCACATAGCTGAGTCAAAAAACAAAGACACAGTTGATAACTTCACCAA
TGTGAGCGTCGATGCTGAGATTGTTGGACAAGATGAATTGGATAACGGGTCAGGCAGGGG
TAGAGGACGTGGTGATGGTCCAGCAAAAGCTTGGCAGCAAGATGGAGATTGGATGTGTCC
AAATACAAGGTCTGTTACGATTGCTGTGGCAATGTAAATTTTGCCTTCCGTGGTGTGTGT
AATCGTTGTGGAGCCTCTCGCCCTGCTGGTGTTAGTGGATCAGGTGGTGGTGGTGGTAGG
GGTAGAGGCCGTGGTAGTGATGATGCAAGAGGCAGTCGTGCTGCTGCTGCTGTTGGTGGT
CCTCCTGGGCTGTTTGGTCCTAATGATTGGCCATGTACGATGTGTGGCAATGTAAACTGG
GCCAAGCGGACCAAATGTAATGTCTGTAACACCTCTAGGCCAGGTCACAATGAAGGTGGT
GTGAGAGGTGGCCGGGGTGGCGGCTTTAAAGAACTTGATGAAGAAGAACTAGAAGAAGTA
CGGAGGCGCCGGAAAGAAGCTGAGGAGGTAGGATGCTTTCTTTTGCATTATTGGATTTGT
GTCATGATATTGGGTTTCCATATCAAAACGTTCTTCTTGTAGGATGATGGAGAAATGTAT
GATGAATTTGGTAACCTGAAAAAGAAGTTCCGTGCTAAGTCACATCAAACTGAGAGTACA
CCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAAGTTGAGCACCGTTCCACTGAGAGA
GAAGGCCGAGAGAGGAGCAGAGATCGGGGCAGGGACGACTACGATGAAAGGGAAAGCAAG
AACAGAGACAGAGGTTCTCATGGAAGAGAGCGGCGCCGTAGCCGAAGCAGGAGCAGAGA