- Transcript HORVU5Hr1G054500.13
- Transcript IDHORVU5Hr1G054500.13
- Gene IDHORVU5Hr1G054500
Barley RTD
Exon Structure of HORVU5Hr1G054500.13
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 428280957 | 428280868 | + |
| chr5H | 2 | 428281973 | 428281841 | + |
| chr5H | 3 | 428282708 | 428282078 | + |
| chr5H | 4 | 428283382 | 428283299 | + |
| chr5H | 5 | 428283709 | 428283628 | + |
| chr5H | 6 | 428283911 | 428283785 | + |
| chr5H | 7 | 428284427 | 428284091 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g12800.1 | +2 | 3e-65 | 183 | 97/129 (75%) | protein|zinc finger Ran-binding domain-containing protein 2, putative, expressed |
| TAIR PP10 | AT1G50300 @ ARAPORT AT1G50300.1 @ TAIR |
+2 | 7e-38 | 142 | 78/129 (60%) | Symbols: TAF15 | TBP-associated factor 15 | chr1:18628818-18631662 REVERSE LENGTH=372 |
| BRACH PP3 | Bradi1g19280.1.p | +2 | 1e-53 | 186 | 102/129 (79%) | pacid=32805605 transcript=Bradi1g19280.1 locus=Bradi1g19280 ID=Bradi1g19280.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1484 bp)
>HORVU5Hr1G054500.13 1484 150831_barley_pseudomolecules CGCCGCGTTCCCGTCGGCAGAGCACGAGGCGCGCGGTCCTCCGCGCACGCCTTCGATCCG CGCCGTCAACCTCGGCGCATCCCGGACTAGATGGCTGGATATATGTCTCGCGGACCCCCA AATGGCTCTATTTATGTATGCAATCTGCCTCCTGGAACTGATGAGACCATGTTGGCTGAA TATTTTGGCACCATAGGGTTGCTAAAGGTATGGGTCTTACCAGAAGGACAAAAGGACTGG CCACCCAAAGATTTGGATATACAGGGACAAAGTTACAAATGAACCAAAGGGTGATGCAAC AGTCACCTATGAAGATCCCCATGCTGCTTCAGCTGCTGTGGAATGGTTCAACAATAAGGA TTTCCATGGAAGCATCATCCAGGTTCACATAGCTGAGTCAAAAAACAAAGACACAGTTGA TAACTTCACCAATGTGAGCGTCGATGCTGAGATTGTTGGACAAGATGAATTGGATAACGG GTCAGGCAGGGGTAGAGGACGTGGTGATGGTCCAGCAAAAGCTTGGCAGCAAGATGGAGA TTGGATGTGTCCAAATACAAGGTCTGTTACGATTGGTGAGCAACTTCTCTTTTGTTGCTA ATTAGTATGGCCTTTACTATGTACTCTATCCTTTCTTATATGATTTCTTCTTTCAGCTGT GGCAATGTAAATTTTGCCTTCCGTGGTGTGTGTAATCGTTGTGGAGCCTCTCGCCCTGCT GGTGTTAGTGGATCAGGTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGTAGTGATGATGCA AGAGGCAGTCGTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGGCTGTTTGGTCCTAATGAT TGGCCATGTACGATGTGTGGCAATGTAAACTGGGCCAAGCGGACCAAATGTAATGTCTGT AACACCTCTAGGCCAGGTCACAATGAAGGTGGTGTGAGAGGTGGCCGGGGTGGCGGCTTT AAAGAACTTGATGAAGAAGAACTAGAAGAAGTACGGAGGCGCCGGAAAGAAGCTGAGGAG GATGATGGAGAAATGTATGATGAATTTGGTAACCTGAAAAAGAAGTTCCGTGCTAAGTCA CATCAAACTGAGAGTACACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAAGTTGAG CACCGTGGTTCCACTGAGAGAGAAGGCCGAGAGAGGAGCAGAGATCGGGGCAGGGACGAC TACGATGAAAGGGAAAGCAAGAACAGAGACAGAGGTTCTCATGGAAGAGAGCGGCGCCGT AGCCGAAGCAGGAGCAGAGACCGCGAGAAGGAGAGGGGGAGGGACAGGGGCAGAGATCGT GGCAACGAGAGAAGCTGGGAGCGCGGCACTGATCGTGAACGTGATCGCTACAGATGATAT GTCAGGAGTTTTGTCATGTTTGCTTGCCACTTTTCGGTTTTCTGAACCTTTTGTTATGCT GTTGGAGAGCTGTGGTGTATCACACTGTTATCATTAACATGGGA