Transcript Data
Barley RTD
Links



Exon Structure of HORVU5Hr1G051890.9

ChromosomeExonStartStopDirection
chr5H1405761523405761346+
chr5H2405762633405762486+
chr5H3405762807405762730+
chr5H4405763442405763358+
chr5H5405763594405763535+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g21250.2 +1 3e-99 285 165/179 (92%) protein|clathrin adaptor complex small chain domain containing protein, expressed
TAIR PP10 AT4G08520 @ ARAPORT
AT4G08520.1 @ TAIR		 +1 6e-77 228 128/177 (72%) Symbols: | SNARE-like superfamily protein | chr4:5417887-5420295 FORWARD LENGTH=181
BRACH PP3 Bradi4g08770.4.p +1 6e-104 296 172/179 (96%) pacid=32783612 transcript=Bradi4g08770.4 locus=Bradi4g08770 ID=Bradi4g08770.4.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (549 bp)

>HORVU5Hr1G051890.9 549 150831_barley_pseudomolecules
CCCGTTACCGTTACACAGGAATCTTGCCCGTCTGTGAAGAACATTTTGCTACTGGATTCT
GAGGGAAAGCGCGTTGCTGTGAAGTACTTCTCGGATGATTGGCCGAACAACGCATCTAGG
TTGACCTTTGAAAAGTCCATTTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGCT
GAGATAACATTGCTTGATGGTAATATTGTTGTTTACAAGTTTGTACAAGACCTTCACTTC
TTCGTCACTGCCGGAGATGATGAGAATGAGCTAATCATAGCAAATGTGCTACAGGGTTTT
GCTGATTCGGTTGGTCTTCTACTCAGGGGTGACGTTGAGAAGAGGACTGCACTTGAGAAC
TTGGACTTGATACTTCTCTGCATTGATGAGATTATTGATGGCGGCATAATTCTTGAAACA
GATGCGAATACCATTGCGGGGAAGGTTGCAACCAATGCTGCTGACGGTTCTGTTCCCTTC
TCTGAGCAGACAATATCCCAAGCTCTGGCCACAGCCAGGGAACACTTTGCAAGATCTCTT
CTGAAGTGA