Transcript Data
Barley RTD
Links



Exon Structure of HORVU5Hr1G051890.8

ChromosomeExonStartStopDirection
chr5H1405760204405760184+
chr5H2405760512405760427+
chr5H3405761523405761364+
chr5H4405762633405762486+
chr5H5405762807405762730+
chr5H6405763442405763358+
chr5H7405763695405763535+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g21250.2 +3 7e-103 297 171/183 (93%) protein|clathrin adaptor complex small chain domain containing protein, expressed
TAIR PP10 AT3G09800 @ ARAPORT
AT3G09800.1 @ TAIR		 +3 2e-75 226 127/178 (71%) Symbols: | SNARE-like superfamily protein | chr3:3006731-3007916 REVERSE LENGTH=179
BRACH PP3 Bradi4g08770.4.p +3 8e-108 309 178/183 (97%) pacid=32783612 transcript=Bradi4g08770.4 locus=Bradi4g08770 ID=Bradi4g08770.4.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (739 bp)

>HORVU5Hr1G051890.8 739 150831_barley_pseudomolecules
CCCGATCACTCTCCCTTCCAGAGGTGCGTTTCTTTCTTCGGCAGGAAGCTTGGACCGGAG
GAAGGTGCTGAGAGGGCGGAAAGGAGGCCATGGGGGAATTCTCCAAGGAATCTTGCCCGT
CTGTGAAGAACATTTTGCTACTGGATTCTGAGGGAAAGCGCGTTGCTGTGAAGTACTTCT
CGGATGATTGGCCGAACAACGCATCTAGGTTGACCTTTGAAAAGTCCATTTTTACTAAAA
CTCTGAAGACAAATGCACGCTCAGAAGCTGAGATAACATTGCTTGATGGTAATATTGTTG
TTTACAAGTTTGTACAAGACCTTCACTTCTTCGTCACTGCCGGAGATGATGAGAATGAGC
TAATCATAGCAAATGTGCTACAGGGTTTTGCTGATTCGGTTGGTCTTCTACTCAGGGGTG
ACGTTGAGAAGAGGACTGCACTTGAGAACTTGGACTTGATACTTCTCTGCATTGATGAGA
TTATTGATGGCGGCATAATTCTTGAAACAGATGCGAATACCATTGCGGGGAAGGTTGCAA
CCAATGCTGCTGACGGTTCTGTTCCCTTCTCTGAGCAGACAATATCCCAAGCTCTGGCCA
CAGCCAGGGAACACTTTGCAAGATCTCTTCTGAAGTGAGAAACCACTGCTTCTTCTGTCA
CCCCTGTTACAACTTGTGTGTGTTTGAGGTCTGGCTACTATGCTATAGGCCTGGTAGCGG
TCACTTAACCAGAAGCGCA