Transcript Data
Barley RTD
Links



Exon Structure of HORVU5Hr1G051890.4

ChromosomeExonStartStopDirection
chr5H1405760204405760081+
chr5H2405760512405760450+
chr5H3405761523405761364+
chr5H4405762807405762486+
chr5H5405763442405763358+
chr5H6405763694405763535+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g21250.2 +2 5e-94 277 171/215 (80%) protein|clathrin adaptor complex small chain domain containing protein, expressed
TAIR PP10 AT3G09800 @ ARAPORT
AT3G09800.1 @ TAIR		 +2 2e-67 208 127/210 (60%) Symbols: | SNARE-like superfamily protein | chr3:3006731-3007916 REVERSE LENGTH=179
BRACH PP3 Bradi4g08770.4.p +2 8e-99 288 178/215 (83%) pacid=32783612 transcript=Bradi4g08770.4 locus=Bradi4g08770 ID=Bradi4g08770.4.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (914 bp)

>HORVU5Hr1G051890.4 914 150831_barley_pseudomolecules
GTCCATTTCCGCTCGCCTAATCCCTCCCGTCTTTCTCTACACTCGTCTGCTGCATCTCAG
ATCTCGCGGGCACCAACAAACCAAAGCAAAGCTCTCCCGCTGTCCCGATCACTCTCCCTT
CCAGGAAGCTTGGACCGGAGGAAGGTGCTGAGAGGGCGGAAAGGAGGCCATGGGGGAATT
CTCCAAGGAATCTTGCCCGTCTGTGAAGAACATTTTGCTACTGGATTCTGAGGGAAAGCG
CGTTGCTGTGAAGTACTTCTCGGATGATTGGCCGAACAACGCATCTAGGTTGACCTTTGA
AAAGTCCATTTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGCTGAGATAACATT
GCTTGATGGTAATATTGTTGTTTACAAGTTTGTACAAGACCTTCACTTCTTCGTCACTGC
CGGAGATGATGAGAATGAGCTAATCATAGCAAATGTGCTACAGGGTTTTGCTGATTCGGT
TGGTCTTCTACTCAGGTAATATACATGCTGTAATGTTACTGCATGAACTGGTATTTTGAT
ACTGGTAATTTGTAAGGCAGCTGGTTCAAGGTGCAACTTATTGTGTTTTAGGGGTGACGT
TGAGAAGAGGACTGCACTTGAGAACTTGGACTTGATACTTCTCTGCATTGATGAGATTAT
TGATGGCGGCATAATTCTTGAAACAGATGCGAATACCATTGCGGGGAAGGTTGCAACCAA
TGCTGCTGACGGTTCTGTTCCCTTCTCTGAGCAGACAATATCCCAAGCTCTGGCCACAGC
CAGGGAACACTTTGCAAGATCTCTTCTGAAGTGAGAAACCACTGCTTCTTCTGTCACCCC
TGTTACAACTTGTGTGTGTTTGAGGTCTGGCTACTATGCTATAGGCCTGGTAGCGGTCAC
TTAACCAGAAGCGC