- Transcript HORVU5Hr1G051890.3
- Transcript IDHORVU5Hr1G051890.3
- Gene IDHORVU5Hr1G051890
Barley RTD
Exon Structure of HORVU5Hr1G051890.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 405760204 | 405760070 | + |
| chr5H | 2 | 405760512 | 405760450 | + |
| chr5H | 3 | 405761523 | 405761364 | + |
| chr5H | 4 | 405762633 | 405762486 | + |
| chr5H | 5 | 405762807 | 405762730 | + |
| chr5H | 6 | 405763442 | 405763358 | + |
| chr5H | 7 | 405763863 | 405763535 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g21250.2 | +1 | 2e-101 | 297 | 171/183 (93%) | protein|clathrin adaptor complex small chain domain containing protein, expressed |
| TAIR PP10 | AT3G09800 @ ARAPORT AT3G09800.1 @ TAIR |
+1 | 4e-74 | 226 | 127/178 (71%) | Symbols: | SNARE-like superfamily protein | chr3:3006731-3007916 REVERSE LENGTH=179 |
| BRACH PP3 | Bradi4g08770.4.p | +1 | 2e-106 | 309 | 178/183 (97%) | pacid=32783612 transcript=Bradi4g08770.4 locus=Bradi4g08770 ID=Bradi4g08770.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (998 bp)
>HORVU5Hr1G051890.3 998 150831_barley_pseudomolecules CTAACCAGCTCGTCCATTTCCGCTCGCCTAATCCCTCCCGTCTTTCTCTACACTCGTCTG CTGCATCTCAGATCTCGCGGGCACCAACAAACCAAAGCAAAGCTCTCCCGCTGTCCCGAT CACTCTCCCTTCCAGGAAGCTTGGACCGGAGGAAGGTGCTGAGAGGGCGGAAAGGAGGCC ATGGGGGAATTCTCCAAGGAATCTTGCCCGTCTGTGAAGAACATTTTGCTACTGGATTCT GAGGGAAAGCGCGTTGCTGTGAAGTACTTCTCGGATGATTGGCCGAACAACGCATCTAGG TTGACCTTTGAAAAGTCCATTTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGCT GAGATAACATTGCTTGATGGTAATATTGTTGTTTACAAGTTTGTACAAGACCTTCACTTC TTCGTCACTGCCGGAGATGATGAGAATGAGCTAATCATAGCAAATGTGCTACAGGGTTTT GCTGATTCGGTTGGTCTTCTACTCAGGGGTGACGTTGAGAAGAGGACTGCACTTGAGAAC TTGGACTTGATACTTCTCTGCATTGATGAGATTATTGATGGCGGCATAATTCTTGAAACA GATGCGAATACCATTGCGGGGAAGGTTGCAACCAATGCTGCTGACGGTTCTGTTCCCTTC TCTGAGCAGACAATATCCCAAGCTCTGGCCACAGCCAGGGAACACTTTGCAAGATCTCTT CTGAAGTGAGAAACCACTGCTTCTTCTGTCACCCCTGTTACAACTTGTGTGTGTTTGAGG TCTGGCTACTATGCTATAGGCCTGGTAGCGGTCACTTAACCAGAAGCGCAACTGTGACAG ACAGATTTGTCTGGATTCTTCTTAAATGATATGTAATACTATTTTCTCGTCAAATGCATG CTGCGTGTCGTACATTTTCTGGAGGTATAGAGAAATAATTTTTGACGTTAATCCAATTTC TGCTAAATAACACTCTTCTCAAACCGGAAAGGGCGGAT