Transcript Data
Barley RTD
Links



Exon Structure of HORVU5Hr1G051890.10

ChromosomeExonStartStopDirection
chr5H1405761523405761361+
chr5H2405762633405762486+
chr5H3405762807405762730+
chr5H4405763064405762931+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g21250.2 +1 3e-74 221 121/133 (91%) protein|clathrin adaptor complex small chain domain containing protein, expressed
TAIR PP10 AT3G09800 @ ARAPORT
AT3G09800.1 @ TAIR		 +1 5e-62 189 101/138 (73%) Symbols: | SNARE-like superfamily protein | chr3:3006731-3007916 REVERSE LENGTH=179
BRACH PP3 Bradi4g08770.4.p +1 8e-76 225 109/115 (95%) pacid=32783612 transcript=Bradi4g08770.4 locus=Bradi4g08770 ID=Bradi4g08770.4.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (523 bp)

>HORVU5Hr1G051890.10 523 150831_barley_pseudomolecules
CAGGAATCTTGCCCGTCTGTGAAGAACATTTTGCTACTGGATTCTGAGGGAAAGCGCGTT
GCTGTGAAGTACTTCTCGGATGATTGGCCGAACAACGCATCTAGGTTGACCTTTGAAAAG
TCCATTTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGCTGAGATAACATTGCTT
GATGGTAATATTGTTGTTTACAAGTTTGTACAAGACCTTCACTTCTTCGTCACTGCCGGA
GATGATGAGAATGAGCTAATCATAGCAAATGTGCTACAGGGTTTTGCTGATTCGGTTGGT
CTTCTACTCAGGGGTGACGTTGAGAAGAGGACTGCACTTGAGAACTTGGACTTGATACTT
CTCTGCATTGATGAGATTATTGATGGCGGTGTTGTATTGTTATCTACTCCATCCGTCCCA
TAATATAAGAGCGTTTATGGGACGGAGGGAGTACTAATTTTTATTTTATGTCCATTTTCT
GGGAGCTCTCATTGGAGTTTTTGTAAAATATGTGAAAAGGTAG