- Transcript HORVU5Hr1G050800.5
- Transcript IDHORVU5Hr1G050800.5
- Gene IDHORVU5Hr1G050800
Barley RTD
Exon Structure of HORVU5Hr1G050800.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 395635177 | 395634676 | - |
| chr5H | 2 | 395636061 | 395635917 | - |
| chr5H | 3 | 395638333 | 395636228 | - |
| chr5H | 4 | 395638652 | 395638423 | - |
| chr5H | 5 | 395639728 | 395639606 | - |
| chr5H | 6 | 395640406 | 395639813 | - |
| chr5H | 7 | 395640964 | 395640856 | - |
| chr5H | 8 | 395641433 | 395641314 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g21350.3 | +2 | 0.0 | 1132 | 626/1034 (61%) | protein|cig3, putative, expressed |
| TAIR PP10 | AT5G19400 @ ARAPORT AT5G19400.2 @ TAIR |
+2 | 0.0 | 598 | 318/696 (46%) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059 |
| BRACH PP3 | Bradi3g20200.3.p | +2 | 0.0 | 1083 | 611/1037 (59%) | pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3929 bp)
>HORVU5Hr1G050800.5 3929 150831_barley_pseudomolecules CGTAAACAAAAAGACGAAAAATAGCCTGCCCTTCCTTCCTCTCTTCCCCTCCCCAAAATT CCCCTCTCCTTCTCTCGCTCCAGTCGCGACGGCGACGGCGACGACGACGACGACGATCAG TTCGTTGCAGGTGATGGTACTGATGTTCAATTGATTAATGATGACTGTTCCGATGGATAG TACTGCTGTTCCGCCATCGCGGGACCTCGTGCAGCGCCTCCTTAAGAAGNNNNNNGAGCT CAAAAGTCATCTTGAGAAGTCAGCACAGTCCAAAGTCCCATCAGATCCCAACATATGGCT TCAGATGCGTGAGAACTTTGAGAAAATGATTCTGGCAGATCATGACTTTTGTGAAAAGCA TGAGATCGAGTATATTTTGTGGCAGTTGCACTACAAAAGAATCGAGGAGTTCAGGAACCA CATTAGTTCTGCAGGTTCAGCTGCATCTCAGAATGGTAAGAACAATGCCAACCCAGATCG AATCAAGAGAATTAAGTCGGCCTTCAGGAGCTTTCTTTCAGAAGCATCGGGCTTCTATCA TGACTTGATGTTCAAGATCAAATCCAACTACGGCCTTCCTCTGGGTTACTTCTTGGAGTC TCCTGAGAATGCAAGCAGCCCTGACAAAAATGATAAGAGGACAGCTGATGCTAAGAAAGC CCTGATATCATGCCACCGTTGTCTCATATATCTGGGTGATTTGGCCCGCTATAAGGGTTT GTTTGGTGAAGCTGATTCTGCAAAACGTGAATATGCTGCGGCTTCTAATTACTACAAGGA GGCAGTTTCAATCTGCCCTTCCAGCGGCAATCCACACCATCAGCTTGCAATATTAGCTTC TTACTCTGGCAATGAGGTAGTGGCTGTCTACAGATACTTTCGAAGCTTAGCTGCAGACAC TCCCTTCTGTACAGCACGGGACAACTTGATTCTTGCTTTTGAGAAGAATCGCCAGATCTT TGCACAGCTGCCAATCAACAACAAAGTTGCAATTGCTAGGACATTACCCCCACGGTCAGC TGGGAGGGGCAGAGGACGGGGCGAAATAAGGTTTCAGCCCAAGGATGTTAATACTGAAGC AGCTTCAAAAGAGCGAGATCAAAATATTCCTGATACACGGAAGTCCTTCTTTATGCGGTT TGTTAGGCTCAATGGAATTCTTTTCACAAAGACCAGTTTGGAAACATTTGAGGAACTGTT TGATGTGGTCATCAGTGATCTGAAAATTCTCCTCTCTTCTGGTCCAAATGAAGAGTTCCA TTTTGGTTCTGATGCTGCAGACAACGCATTAGTTATTGTTCGACTTGTTGCAATCCTTAT ATTCACAGTGCACAACGTGAAAAAGGAATCAGATAACCAGTCATATGCTGAAATTGTCCA ACGCAGGGTACTTCTTCAAAATGCATTTACAGCTGCTTTTGAGTTTGTTGGACATATTCT CAAAAGGTGCTCAGAGCTTCGTGACATTGCATCAAGTTTCTATCTTCCAGCCATTGTGGT CTACATCGAATGGCTCGCATGCCAACCGGAGTTAGCTGCTGATTCGGAGATGGACGAGAA GCATGCGAATGCTCGATCTTTCTTCTGGAACCAGTGTGTCTTGCTTATGAATAAGCTCAT CCTTACAAACCTTGCGTCCATTGATGGTGATGATGATGAGGCTTGCTTTTTTGATATGGG CGTGTATGAAGAGGGTGAAACTGGCAATCGACTTGCATTGTGGGAAGATTATGAATTAAG GGGATTTTCCCCCTTGGTGCCTGCACATATTATCTTGGATTTCTCAAGCAAGCACACATT TGGAAGTGATGGTAGCACTAAGGAGAAGAAAGCACGGGCACAACGGATACTTTCTGCAGG GAAGGCTCTACTCAATTTTGTCCAGATTGATCAACTGAGAATATTTTTTGATCAATCTTC AAGAAAATTTGTTGTGGCCAAGGAGCCTCCTGTTTTTGAAGCTGCCATCTCTACTCATAG ATCTCGCAATGCACCTGAACCAAATGTTGTTGAGCTGGCACATGAAATTGGTAACAAATT TGATGCAGTGGCAACTAATCTTGGAGCAATGCAGTCGGGAGTACAGTTGTGTTCCGAGGG AGAAGATGATGAAGAAATTGTTTTCAAACCTACAGTATCTGAGAAGCTCCCGAAAGTACG TACCGAACTACCCGTTAATGGATATATTCAGCCTGTACAAATGTCTACTGCTGGGTGGCC AACAATTGGCGGACCAGCTGCTAGTCAGAGTACTGCATCTGCATCAGCTCCTGGAAACTG TAATGTAAGTGAGTCACTTCCCATGTCTTCTGGTGGTTGGGGTTTCAATGGCAGGCAAGA GGCTATTCCTAGCAATTCAATGTCGACAACTTACGAATTTGTGCAGCCTGTTGAGATGCC TACTTCCAGCTGGGCAAGTAATGGTGCACCACTTGTTGGCTCTCCGAACACAATGCCTGC TTTCTCAGGTGCCATCTCTGATCCGCGTGTATCTGCAGCAATGGTTCCACATTTTGGCAG CCCAGATTATTCAAAATTGATCCTTGAACAAGAAAAACTCTTAATGATGGGATTAAATAA TGTTCATTTGTCTGGAAATGGATTCCCTGAGCAGAGGTTTCAGGGTGGATTGAGTGGATT ACAGTCAATTGTATATTCTCCACATGTATCTGTTGAATCTGGGCGCAACAATACAAGTTT GATGCATAATCAGGTGAAAGCGACTGAAGAAACCATCCCATCCACTTCTGATTTAATTGT ACCATCGGCAGCAGCATCTGGTGGGGTGACAATCAATCTCACTGATGCACCTGTAGCTGT ATCAAAGAAGAATCCTGTAAGTCGTCCATCAAGGCCCGTTGGTCCTCCTCCAGGATTTAA CCACATCACTCCAAAACGCCATGATGATATTATGCCATTTGAGAAGCTGCAGCACCAACA GATCGATGATTACAGCTGGCTGGATGGTTACCAGCCATCAATGGAACATGTTCATAACTC AAAAGCTATTTATCTTGATGATGGGACTACCAGCAGTGCATTCACCACTCCCTTCCCTTT CCCTGGGAAACAGCAGGTTTCTGGGGTGCACACCCTAGGGGCCAGTGAGAAAACATGGCA AGATTTCCACCTTTTTGACCCTGCAAAGCAGAATATGGTTCAAAACCACCAACAAATTAA TCAGCACAGTGGTCAAGTGGCAGAAAAGCAGCCGGCAAAACCTATCGGATCTGGCCGTTA TCTTGTGTGACGGAGTAACTTGTACCTGGATGGTTACTACTGGAGTCGCTGAGGATCTGT TGGAGTAAGTGGCACAGCTTGATATACCTATTCAATTCGGACCCATACCTGCAGCCCTTT CATAGTGTTAAATTTCTTTTGGAGAATGGTGGTCTTGGAAGCATAGCAAGTGCTGCTGTT AGGTTTGGGTGTGCCAGGTCTTCCGGGGCCAGTTGGAGGTTGGAGGGTGATTGATCTTTG GACTGTTTGATGGGGATGAATTGTACGCAGAACGCTTGGATGCTCAGGCATGAGGGGTTT GATCGAAGGAACTCGAATCCAGTCACTATAGGCGCGCTATGTGCTTCAGCTCTCATTGGA TAAACTGTCTACCATACAGAGAATGGCCAGTGTGTGGCTGCTGTGGTGGAAACTAAATGC CGTTTAGTGTTGCTCGTGCTCATCTATGGCTACTATGAATTTAGTTCGAGGAACAGTTAG CTTGCTGTCAAATTGGCCCTCGAAGTATACTACATCTACTTATGTTGCAATGTTTGCGAT TTGCTGTTGGCAACAGCAGGTTATAATCCTCGTTTTGTGAGGAAGTTTACTTCGATATCA CTATATGATTTGAACAATTTGTTTTGGTGTTTGTCCGGTACCAGAAAACATAACCCTTTT TGTGCAATAATTTTCTTGTTACCTTGTCG