- Gene HORVU5Hr1G050800
- Gene IDHORVU5Hr1G050800
- Location chr5H: 395634650 - 395641471
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
BART1_0-u35643 | 96.8 | - | - | 6822 | -227 | Containing |
Transcripts from Gene HORVU5Hr1G050800
Transcript | Length(bp) | Description |
---|---|---|
HORVU5Hr1G050800.1 | 3591 | gene=HORVU5Hr1G050800 CDS=1-2886 |
HORVU5Hr1G050800.2 | 3796 | gene=HORVU5Hr1G050800 CDS=985-3102 |
HORVU5Hr1G050800.3 | 4429 | gene=HORVU5Hr1G050800 CDS=792-3737 |
HORVU5Hr1G050800.4 | 4419 | gene=HORVU5Hr1G050800 CDS=782-3727 |
HORVU5Hr1G050800.5 | 3929 | gene=HORVU5Hr1G050800 CDS=158-3250 |
Exon Structure of HORVU5Hr1G050800
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g21350.3 | +3 | 0.0 | 1118 | 607/1007 (60%) | protein|cig3, putative, expressed |
TAIR PP10 | AT5G19400 @ ARAPORT AT5G19400.2 @ TAIR |
+3 | 0.0 | 596 | 308/656 (47%) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059 |
BRACH PP3 | Bradi3g20200.3.p | +3 | 0.0 | 1076 | 595/1010 (59%) | pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons