Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u3564396.8--6822-227Containing




Transcripts from Gene HORVU5Hr1G050800

TranscriptLength(bp)Description
HORVU5Hr1G050800.13591gene=HORVU5Hr1G050800 CDS=1-2886
HORVU5Hr1G050800.23796gene=HORVU5Hr1G050800 CDS=985-3102
HORVU5Hr1G050800.34429gene=HORVU5Hr1G050800 CDS=792-3737
HORVU5Hr1G050800.44419gene=HORVU5Hr1G050800 CDS=782-3727
HORVU5Hr1G050800.53929gene=HORVU5Hr1G050800 CDS=158-3250



Exon Structure of HORVU5Hr1G050800


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g21350.3 +3 0.0 1118 607/1007 (60%) protein|cig3, putative, expressed
TAIR PP10 AT5G19400 @ ARAPORT
AT5G19400.2 @ TAIR
+3 0.0 596 308/656 (47%) Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059
BRACH PP3 Bradi3g20200.3.p +3 0.0 1076 595/1010 (59%) pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons