- Transcript HORVU5Hr1G050800.2
- Transcript IDHORVU5Hr1G050800.2
- Gene IDHORVU5Hr1G050800
Barley RTD
Exon Structure of HORVU5Hr1G050800.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 395635177 | 395634661 | - |
| chr5H | 2 | 395636061 | 395635917 | - |
| chr5H | 3 | 395638333 | 395636228 | - |
| chr5H | 4 | 395638652 | 395638423 | - |
| chr5H | 5 | 395640403 | 395639606 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g21350.3 | +1 | 0.0 | 1102 | 607/1035 (59%) | protein|cig3, putative, expressed |
| TAIR PP10 | AT5G19400 @ ARAPORT AT5G19400.2 @ TAIR |
+1 | 0.0 | 580 | 310/698 (44%) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059 |
| BRACH PP3 | Bradi3g20200.3.p | +1 | 0.0 | 1061 | 595/1038 (57%) | pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3796 bp)
>HORVU5Hr1G050800.2 3796 150831_barley_pseudomolecules NNNGAGCTCAAAAGTCATCTTGAGAAGTCAGCACAGTCCAAAGTCCCATCAGATCCCAAC ATATGGCTTCAGATGCGTGAGAACTTTGAGAAAATGATTCTGGCAGATCATGACTTTTGT GAAAAGCATGAGATCGAGTATATTTTGTGGCAGTTGCACTACAAAAGAATCGAGGAGTTC AGGAACCACATTAGTTCTGCAGGTTCAGCTGCATCTCAGAATGGTAAGAACAATGCCAAC CCAGATCGAATCAAGAGAATTAAGTCGGCCTTCAGGAGCTTTCTTTCAGAAGCATCGGGC TTCTATCATGACTTGATGTTCAAGATCAAATCCAACTACGGCCTTCCTCTGGGTTACTTC TTGGAGTCTCCTGAGAATGCAAGCAGCCCTGACAAAAATGATAAGAGGACAGCTGATGCT AAGAAAGCCCTGATATCATGCCACCGTTGTCTCATATATCTGGGTGATTTGGCCCGCTAT AAGGGTTTGTTTGGTGAAGCTGATTCTGCAAAACGTGAATATGCTGCGGCTTCTAATTAC TACAAGGAGGCAGTTTCAATCTGCCCTTCCAGCGGCAATCCACACCATCAGGTTTAATCT CAACTCTGTATTTCATCAAATGTTCATGTATTCTCTGTTCAGTTTTCTAATGATGACACT GATTGGATTTGTCAGCTTGCAATATTAGCTTCTTACTCTGGCAATGAGGTAGTGGCTGTC TACAGATACTTTCGAAGCTTAGCTGCAGACACTCCCTTCTGTACAGCACGGGACAACTTG ATTCTTGCTTTTGAGAAGAATCGCCAGATCTTTGCACAGCTGCCAATCAACAACAAAGTT GCAATTGCTAGGACATTACCCCCACGGTCAGCTGGGAGGGGCAGAGGACGGGGCGAAATA AGGTTTCAGCCCAAGGATGTTAATACTGAAGCAGCTTCAAAAGAGCGAGATCAAAATATT CCTGATACACGGAAGTCCTTCTTTATGCGGTTTGTTAGGCTCAATGGAATTCTTTTCACA AAGACCAGTTTGGAAACATTTGAGGAACTGTTTGATGTGGTCATCAGTGATCTGAAAATT CTCCTCTCTTCTGGTCCAAATGAAGAGTTCCATTTTGGTTCTGATGCTGCAGACAACGCA TTAGTTATTGTTCGACTTGTTGCAATCCTTATATTCACAGTGCACAACGTGAAAAAGGAA TCAGATAACCAGTCATATGCTGAAATTGTCCAACGCAGGGTACTTCTTCAAAATGCATTT ACAGCTGCTTTTGAGTTTGTTGGACATATTCTCAAAAGGTGCTCAGAGCTTCGTGACATT GCATCAAGTTTCTATCTTCCAGCCATTGTGGTCTACATCGAATGGCTCGCATGCCAACCG GAGTTAGCTGCTGATTCGGAGATGGACGAGAAGCATGCGAATGCTCGATCTTTCTTCTGG AACCAGTGTGTCTTGCTTATGAATAAGCTCATCCTTACAAACCTTGCGTCCATTGATGGT GATGATGATGAGGCTTGCTTTTTTGATATGGGCGTGTATGAAGAGGGTGAAACTGGCAAT CGACTTGCATTGTGGGAAGATTATGAATTAAGGGGATTTTCCCCCTTGGTGCCTGCACAT ATTATCTTGGATTTCTCAAGCAAGCACACATTTGGAAGTGATGGTAGCACTAAGGAGAAG AAAGCACGGGCACAACGGATACTTTCTGCAGGGAAGGCTCTACTCAATTTTGTCCAGATT GATCAACTGAGAATATTTTTTGATCAATCTTCAAGAAAATTTGTTGTGGCCAAGGAGCCT CCTGTTTTTGAAGCTGCCATCTCTACTCATAGATCTCGCAATGCACCTGAACCAAATGTT GTTGAGCTGGCACATGAAATTGGTAACAAATTTGATGCAGTGGCAACTAATCTTGGAGCA ATGCAGTCGGGAGTACAGTTGTGTTCCGAGGGAGAAGATGATGAAGAAATTGTTTTCAAA CCTACAGTATCTGAGAAGCTCCCGAAAGTACGTACCGAACTACCCGTTAATGGATATATT CAGCCTGTACAAATGTCTACTGCTGGGTGGCCAACAATTGGCGGACCAGCTGCTAGTCAG AGTACTGCATCTGCATCAGCTCCTGGAAACTGTAATGTAAGTGAGTCACTTCCCATGTCT TCTGGTGGTTGGGGTTTCAATGGCAGGCAAGAGGCTATTCCTAGCAATTCAATGTCGACA ACTTACGAATTTGTGCAGCCTGTTGAGATGCCTACTTCCAGCTGGGCAAGTAATGGTGCA CCACTTGTTGGCTCTCCGAACACAATGCCTGCTTTCTCAGGTGCCATCTCTGATCCGCGT GTATCTGCAGCAATGGTTCCACATTTTGGCAGCCCAGATTATTCAAAATTGATCCTTGAA CAAGAAAAACTCTTAATGATGGGATTAAATAATGTTCATTTGTCTGGAAATGGATTCCCT GAGCAGAGGTTTCAGGGTGGATTGAGTGGATTACAGTCAATTGTATATTCTCCACATGTA TCTGTTGAATCTGGGCGCAACAATACAAGTTTGATGCATAATCAGGTGAAAGCGACTGAA GAAACCATCCCATCCACTTCTGATTTAATTGTACCATCGGCAGCAGCATCTGGTGGGGTG ACAATCAATCTCACTGATGCACCTGTAGCTGTATCAAAGAAGAATCCTGTAAGTCGTCCA TCAAGGCCCGTTGGTCCTCCTCCAGGATTTAACCACATCACTCCAAAACGCCATGATGAT ATTATGCCATTTGAGAAGCTGCAGCACCAACAGATCGATGATTACAGCTGGCTGGATGGT TACCAGCCATCAATGGAACATGTTCATAACTCAAAAGCTATTTATCTTGATGATGGGACT ACCAGCAGTGCATTCACCACTCCCTTCCCTTTCCCTGGGAAACAGCAGGTTTCTGGGGTG CACACCCTAGGGGCCAGTGAGAAAACATGGCAAGATTTCCACCTTTTTGACCCTGCAAAG CAGAATATGGTTCAAAACCACCAACAAATTAATCAGCACAGTGGTCAAGTGGCAGAAAAG CAGCCGGCAAAACCTATCGGATCTGGCCGTTATCTTGTGTGACGGAGTAACTTGTACCTG GATGGTTACTACTGGAGTCGCTGAGGATCTGTTGGAGTAAGTGGCACAGCTTGATATACC TATTCAATTCGGACCCATACCTGCAGCCCTTTCATAGTGTTAAATTTCTTTTGGAGAATG GTGGTCTTGGAAGCATAGCAAGTGCTGCTGTTAGGTTTGGGTGTGCCAGGTCTTCCGGGG CCAGTTGGAGGTTGGAGGGTGATTGATCTTTGGACTGTTTGATGGGGATGAATTGTACGC AGAACGCTTGGATGCTCAGGCATGAGGGGTTTGATCGAAGGAACTCGAATCCAGTCACTA TAGGCGCGCTATGTGCTTCAGCTCTCATTGGATAAACTGTCTACCATACAGAGAATGGCC AGTGTGTGGCTGCTGTGGTGGAAACTAAATGCCGTTTAGTGTTGCTCGTGCTCATCTATG GCTACTATGAATTTAGTTCGAGGAACAGTTAGCTTGCTGTCAAATTGGCCCTCGAAGTAT ACTACATCTACTTATGTTGCAATGTTTGCGATTTGCTGTTGGCAACAGCAGGTTATAATC CTCGTTTTGTGAGGAAGTTTACTTCGATATCACTATATGATTTGAACAATTTGTTTTGGT GTTTGTCCGGTACCAGAAAACATAACCCTTTTTGTGCAATAATTTTCTTGTTACCTTGTC GTATGCAATGCCCGAC