- Transcript HORVU5Hr1G050800.1
- Transcript IDHORVU5Hr1G050800.1
- Gene IDHORVU5Hr1G050800
Barley RTD
Exon Structure of HORVU5Hr1G050800.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 395635177 | 395634650 | - |
| chr5H | 2 | 395636061 | 395635917 | - |
| chr5H | 3 | 395638333 | 395636228 | - |
| chr5H | 4 | 395638652 | 395638423 | - |
| chr5H | 5 | 395639728 | 395639606 | - |
| chr5H | 6 | 395640250 | 395639813 | - |
| chr5H | 7 | 395640348 | 395640328 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g21350.3 | +1 | 0.0 | 1031 | 569/962 (59%) | protein|cig3, putative, expressed |
| TAIR PP10 | AT5G19400 @ ARAPORT AT5G19400.2 @ TAIR |
+1 | 3e-179 | 555 | 290/620 (47%) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059 |
| BRACH PP3 | Bradi3g20200.3.p | +1 | 0.0 | 999 | 561/965 (58%) | pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3591 bp)
>HORVU5Hr1G050800.1 3591 150831_barley_pseudomolecules CCAACATATGGCTTCAGATGCTTGCACTACAAAAGAATCGAGGAGTTCAGGAACCACATT AGTTCTGCAGGTTCAGCTGCATCTCAGAATGGTAAGAACAATGCCAACCCAGATCGAATC AAGAGAATTAAGTCGGCCTTCAGGAGCTTTCTTTCAGAAGCATCGGGCTTCTATCATGAC TTGATGTTCAAGATCAAATCCAACTACGGCCTTCCTCTGGGTTACTTCTTGGAGTCTCCT GAGAATGCAAGCAGCCCTGACAAAAATGATAAGAGGACAGCTGATGCTAAGAAAGCCCTG ATATCATGCCACCGTTGTCTCATATATCTGGGTGATTTGGCCCGCTATAAGGGTTTGTTT GGTGAAGCTGATTCTGCAAAACGTGAATATGCTGCGGCTTCTAATTACTACAAGGAGGCA GTTTCAATCTGCCCTTCCAGCGGCAATCCACACCATCAGCTTGCAATATTAGCTTCTTAC TCTGGCAATGAGGTAGTGGCTGTCTACAGATACTTTCGAAGCTTAGCTGCAGACACTCCC TTCTGTACAGCACGGGACAACTTGATTCTTGCTTTTGAGAAGAATCGCCAGATCTTTGCA CAGCTGCCAATCAACAACAAAGTTGCAATTGCTAGGACATTACCCCCACGGTCAGCTGGG AGGGGCAGAGGACGGGGCGAAATAAGGTTTCAGCCCAAGGATGTTAATACTGAAGCAGCT TCAAAAGAGCGAGATCAAAATATTCCTGATACACGGAAGTCCTTCTTTATGCGGTTTGTT AGGCTCAATGGAATTCTTTTCACAAAGACCAGTTTGGAAACATTTGAGGAACTGTTTGAT GTGGTCATCAGTGATCTGAAAATTCTCCTCTCTTCTGGTCCAAATGAAGAGTTCCATTTT GGTTCTGATGCTGCAGACAACGCATTAGTTATTGTTCGACTTGTTGCAATCCTTATATTC ACAGTGCACAACGTGAAAAAGGAATCAGATAACCAGTCATATGCTGAAATTGTCCAACGC AGGGTACTTCTTCAAAATGCATTTACAGCTGCTTTTGAGTTTGTTGGACATATTCTCAAA AGGTGCTCAGAGCTTCGTGACATTGCATCAAGTTTCTATCTTCCAGCCATTGTGGTCTAC ATCGAATGGCTCGCATGCCAACCGGAGTTAGCTGCTGATTCGGAGATGGACGAGAAGCAT GCGAATGCTCGATCTTTCTTCTGGAACCAGTGTGTCTTGCTTATGAATAAGCTCATCCTT ACAAACCTTGCGTCCATTGATGGTGATGATGATGAGGCTTGCTTTTTTGATATGGGCGTG TATGAAGAGGGTGAAACTGGCAATCGACTTGCATTGTGGGAAGATTATGAATTAAGGGGA TTTTCCCCCTTGGTGCCTGCACATATTATCTTGGATTTCTCAAGCAAGCACACATTTGGA AGTGATGGTAGCACTAAGGAGAAGAAAGCACGGGCACAACGGATACTTTCTGCAGGGAAG GCTCTACTCAATTTTGTCCAGATTGATCAACTGAGAATATTTTTTGATCAATCTTCAAGA AAATTTGTTGTGGCCAAGGAGCCTCCTGTTTTTGAAGCTGCCATCTCTACTCATAGATCT CGCAATGCACCTGAACCAAATGTTGTTGAGCTGGCACATGAAATTGGTAACAAATTTGAT GCAGTGGCAACTAATCTTGGAGCAATGCAGTCGGGAGTACAGTTGTGTTCCGAGGGAGAA GATGATGAAGAAATTGTTTTCAAACCTACAGTATCTGAGAAGCTCCCGAAAGTACGTACC GAACTACCCGTTAATGGATATATTCAGCCTGTACAAATGTCTACTGCTGGGTGGCCAACA ATTGGCGGACCAGCTGCTAGTCAGAGTACTGCATCTGCATCAGCTCCTGGAAACTGTAAT GTAAGTGAGTCACTTCCCATGTCTTCTGGTGGTTGGGGTTTCAATGGCAGGCAAGAGGCT ATTCCTAGCAATTCAATGTCGACAACTTACGAATTTGTGCAGCCTGTTGAGATGCCTACT TCCAGCTGGGCAAGTAATGGTGCACCACTTGTTGGCTCTCCGAACACAATGCCTGCTTTC TCAGGTGCCATCTCTGATCCGCGTGTATCTGCAGCAATGGTTCCACATTTTGGCAGCCCA GATTATTCAAAATTGATCCTTGAACAAGAAAAACTCTTAATGATGGGATTAAATAATGTT CATTTGTCTGGAAATGGATTCCCTGAGCAGAGGTTTCAGGGTGGATTGAGTGGATTACAG TCAATTGTATATTCTCCACATGTATCTGTTGAATCTGGGCGCAACAATACAAGTTTGATG CATAATCAGGTGAAAGCGACTGAAGAAACCATCCCATCCACTTCTGATTTAATTGTACCA TCGGCAGCAGCATCTGGTGGGGTGACAATCAATCTCACTGATGCACCTGTAGCTGTATCA AAGAAGAATCCTGTAAGTCGTCCATCAAGGCCCGTTGGTCCTCCTCCAGGATTTAACCAC ATCACTCCAAAACGCCATGATGATATTATGCCATTTGAGAAGCTGCAGCACCAACAGATC GATGATTACAGCTGGCTGGATGGTTACCAGCCATCAATGGAACATGTTCATAACTCAAAA GCTATTTATCTTGATGATGGGACTACCAGCAGTGCATTCACCACTCCCTTCCCTTTCCCT GGGAAACAGCAGGTTTCTGGGGTGCACACCCTAGGGGCCAGTGAGAAAACATGGCAAGAT TTCCACCTTTTTGACCCTGCAAAGCAGAATATGGTTCAAAACCACCAACAAATTAATCAG CACAGTGGTCAAGTGGCAGAAAAGCAGCCGGCAAAACCTATCGGATCTGGCCGTTATCTT GTGTGACGGAGTAACTTGTACCTGGATGGTTACTACTGGAGTCGCTGAGGATCTGTTGGA GTAAGTGGCACAGCTTGATATACCTATTCAATTCGGACCCATACCTGCAGCCCTTTCATA GTGTTAAATTTCTTTTGGAGAATGGTGGTCTTGGAAGCATAGCAAGTGCTGCTGTTAGGT TTGGGTGTGCCAGGTCTTCCGGGGCCAGTTGGAGGTTGGAGGGTGATTGATCTTTGGACT GTTTGATGGGGATGAATTGTACGCAGAACGCTTGGATGCTCAGGCATGAGGGGTTTGATC GAAGGAACTCGAATCCAGTCACTATAGGCGCGCTATGTGCTTCAGCTCTCATTGGATAAA CTGTCTACCATACAGAGAATGGCCAGTGTGTGGCTGCTGTGGTGGAAACTAAATGCCGTT TAGTGTTGCTCGTGCTCATCTATGGCTACTATGAATTTAGTTCGAGGAACAGTTAGCTTG CTGTCAAATTGGCCCTCGAAGTATACTACATCTACTTATGTTGCAATGTTTGCGATTTGC TGTTGGCAACAGCAGGTTATAATCCTCGTTTTGTGAGGAAGTTTACTTCGATATCACTAT ATGATTTGAACAATTTGTTTTGGTGTTTGTCCGGTACCAGAAAACATAACCCTTTTTGTG CAATAATTTTCTTGTTACCTTGTCGTATGCAATGCCCGACTGAATACCAAT